View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8096_low_12 (Length: 265)
Name: NF8096_low_12
Description: NF8096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8096_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 258
Target Start/End: Complemental strand, 4188868 - 4188625
Alignment:
| Q |
15 |
agaaagaagggtgtgactgtgaatttgggagggtgtaaaagaagattcgttctataggatggaactttatccaaaatatgtcgaagaaagttaaaggaat |
114 |
Q |
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| T |
4188868 |
agaaagaagggtgtgattgtgaatttgggagggtgtaaaagaagattcgttctataggatggaactttatccaaaatatgtcgaagaaagtgaaaggaat |
4188769 |
T |
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| Q |
115 |
tgttgtagtttggcttgatgatgaaggaacaactttgaagtgttcatggattttgatattgttcttgttaaatgccatgtgaaacagaagaggtgttggt |
214 |
Q |
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| T |
4188768 |
tgttgtagtttgggttgatgatgaaggaacaactttgaagtgttcatggattttgatattgttcttgttaaatgccatgtaaaacagaagaagtgttggt |
4188669 |
T |
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| Q |
215 |
tgaatcaattttttggctcggaaagattagaaggaagcttattg |
258 |
Q |
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| T |
4188668 |
tgaatcaattttttggctcggacagattagaaggaagcttattg |
4188625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 156
Target Start/End: Complemental strand, 4250534 - 4250393
Alignment:
| Q |
15 |
agaaagaagggtgtgactgtgaatttgggagggtgtaaaagaagattcgttctataggatggaactttatccaaaatatgtcgaagaaagttaaaggaat |
114 |
Q |
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| T |
4250534 |
agaaagaagggtgtgattgtgaatttgggagggtgtagaagaaaactcgttctactggatggaaccttagccaaaatatgtcgaagaaagtaagagggat |
4250435 |
T |
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| Q |
115 |
tgttgtagtttggcttgatgatgaaggaacaactttgaagtg |
156 |
Q |
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| T |
4250434 |
tgaggtggtttttgttgatgatggaggaacaaccttgaagtg |
4250393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 168
Target Start/End: Complemental strand, 4233506 - 4233353
Alignment:
| Q |
15 |
agaaagaagggtgtgactgtgaatttgggagggtgtaaaagaagattcgttctataggatggaactttatccaaaatatgtcgaagaaagttaaaggaat |
114 |
Q |
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| T |
4233506 |
agaaagaagggtgtgaatgtgaatttgggagggcgtagaagaaaacacgttctactggatggaaccttagccaaaatatgtcaaagtaagtaagaggggt |
4233407 |
T |
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| Q |
115 |
tgttgtagtttggcttgatgatgaaggaacaactttgaagtgttcatggatttt |
168 |
Q |
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|||||| |||| ||||||||| ||||| ||||||| ||||||||||||||| |
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| T |
4233406 |
tgttgttttttgagttgatgatggaggaaaaactttggtgtgttcatggatttt |
4233353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 4195757 - 4195590
Alignment:
| Q |
15 |
agaaagaagggtgtgactgtgaatttgggagggtgtaaaagaagattcgttctataggatggaactttatccaaaatatgtcgaagaaagttaaaggaat |
114 |
Q |
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||||||||| |||||| |||||||||||||||||||| ||||| | ||||||| ||||||||| | | |||||||||||| ||| |||| | ||| | |
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| T |
4195757 |
agaaagaagtgtgtgaatgtgaatttgggagggtgtagaagaaaacacgttctaccggatggaacctaagccaaaatatgtcaaagtaagtaagaggggt |
4195658 |
T |
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| Q |
115 |
tgttgtagtttggcttgatgatgaaggaacaactttgaagtgttcatggattttgatattgttcttgt |
182 |
Q |
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| T |
4195657 |
tgttgttttttgggttgatgatggaggagtaactttaatgtgttcatggattttaatgttgctcttgt |
4195590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 168
Target Start/End: Complemental strand, 4241294 - 4241141
Alignment:
| Q |
15 |
agaaagaagggtgtgactgtgaatttgggagggtgtaaaagaagattcgttctataggatggaactttatccaaaatatgtcgaagaaagttaaaggaat |
114 |
Q |
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|||| |||| || ||| |||||||||||||||||||| || ||||| |||||| ||||||||| ||| ||||||||||||||| ||||| | || || |
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| T |
4241294 |
agaatgaagtgtctgattgtgaatttgggagggtgtagaataagatgtattctattggatggaaccttagccaaaatatgtcgaaaaaagtgagagagat |
4241195 |
T |
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| Q |
115 |
tgttgtagtttggcttgatgatgaaggaacaactttgaagtgttcatggatttt |
168 |
Q |
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|| || |||||| ||||||||| |||||||||||||| |||||| || ||||| |
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| T |
4241194 |
tgaggttgtttggtttgatgatggaggaacaactttgatgtgttcgtgaatttt |
4241141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 15 - 177
Target Start/End: Complemental strand, 4192008 - 4191845
Alignment:
| Q |
15 |
agaaagaagggtgtgactgtgaatttgggagggtgtaaaagaagattcgttctataggatggaactttatccaaaatatgtcgaagaaagttaaaggaat |
114 |
Q |
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|||||||||||||||| |||||| ||||||||||||| ||||| | ||||| | |||| | ||||| ||| ||||||||||||||||| | ||| | |
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| T |
4192008 |
agaaagaagggtgtgattgtgaacttgggagggtgtagaagaaaacacgttccactggatatacctttagccataatatgtcgaagaaagtgagagggaa |
4191909 |
T |
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| Q |
115 |
tgttgtagtttggcttgatga-tgaaggaacaactttgaagtgttcatggattttgatattgtt |
177 |
Q |
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|||||| ||||| ||||||| || ||||||||| |||| ||||||||| ||||||||||||| |
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| T |
4191908 |
tgttgtcgtttgtgttgatgattggaggaacaacattgatgtgttcatgagttttgatattgtt |
4191845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 177
Target Start/End: Complemental strand, 4101078 - 4100922
Alignment:
| Q |
27 |
gtgactgtgaatttgggagggtgtaaaagaagattcgttctataggatggaactttatccaaaatat--gtcgaagaaagttaaaggaattgttgtagtt |
124 |
Q |
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|||| ||||| |||||||||||||| || ||||| | ||||| ||||||| ||| ||||||||| |||||||||||| ||||||| ||| | ||| |
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| T |
4101078 |
gtgattgtgattttgggagggtgtacaaaaagatgcattctactggatggacttttcgccaaaatatatgtcgaagaaagtgaaaggaactgtaatggtt |
4100979 |
T |
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| Q |
125 |
t-ggcttgat---gatgaaggaacaactttgaagtgttcatggattttgatattgtt |
177 |
Q |
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| ||| |||| |||| || |||||||||||||||||||||||||||||||||||| |
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| T |
4100978 |
ttggcatgatattgatggagcaacaactttgaagtgttcatggattttgatattgtt |
4100922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 4121934 - 4121883
Alignment:
| Q |
15 |
agaaagaagggtgtgactgtgaatttgggagggtgtaaaagaagattcgttc |
66 |
Q |
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|||||||||||||||| |||||||||||||||||||| |||||||| ||||| |
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| T |
4121934 |
agaaagaagggtgtgattgtgaatttgggagggtgtagaagaagatacgttc |
4121883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 4102454 - 4102412
Alignment:
| Q |
18 |
aagaagggtgtgactgtgaatttgggagggtgtaaaagaagat |
60 |
Q |
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||||||||||||| |||||||||||||||||||| ||| |||| |
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| T |
4102454 |
aagaagggtgtgattgtgaatttgggagggtgtagaagtagat |
4102412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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