View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8096_low_13 (Length: 245)
Name: NF8096_low_13
Description: NF8096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8096_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 2080963 - 2080730
Alignment:
| Q |
1 |
atctttcggtcaaaaatctgattatccaaccttcagtaccctaaaaatcggagagtttaataatnnnnnnnntataaa-tgttaaccgggaccctcaggg |
99 |
Q |
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|||||| || ||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||| |||||||||| | |||||||| |
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| T |
2080963 |
atcttttggccaaaaatctgattatccaaccttcattatcctaaaaatcggagagtttaataataaaaaaaatataaaatgttaaccggaatcctcaggg |
2080864 |
T |
|
| Q |
100 |
cacgggttaagggtactaaaaaatgaaattatataaaattattgttaatccataaagagtcaaaaatattttcttttataataataatttccttttttgg |
199 |
Q |
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|| ||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
2080863 |
tactggttaagggtactaaaaaaggaaattatataaaattattgttaattcataaaaagtcaaaaatatttccttttatagtaataatttccttttttgg |
2080764 |
T |
|
| Q |
200 |
cagatccttagtcgatgtctcggaaacacaggtt |
233 |
Q |
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|||||||||| |||||||||| | ||||| |||| |
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| T |
2080763 |
cagatccttaatcgatgtctcaggaacaccggtt |
2080730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 197
Target Start/End: Original strand, 20252845 - 20252883
Alignment:
| Q |
159 |
tcaaaaatattttcttttataataataatttcctttttt |
197 |
Q |
| |
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| T |
20252845 |
tcaaaaatattttcttttatgataataatttcctttttt |
20252883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 20364370 - 20364414
Alignment:
| Q |
157 |
agtcaaaaatattttcttttataataataatttccttttttggca |
201 |
Q |
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|
| T |
20364370 |
agtcaaaagtgttatcttttatgataataatttccttttttggca |
20364414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 20431540 - 20431584
Alignment:
| Q |
157 |
agtcaaaaatattttcttttataataataatttccttttttggca |
201 |
Q |
| |
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| T |
20431540 |
agtcaaaagtgttatcttttatgataataatttccttttttggca |
20431584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 5518982 - 5518930
Alignment:
| Q |
144 |
ttaatccataaagagtcaaaaatattttcttttataataataatttccttttt |
196 |
Q |
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|||||||| ||| |||||||||||||||||||||| ||||||||| |||||| |
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| T |
5518982 |
ttaatccacaaaaagtcaaaaatattttcttttatggtaataattttcttttt |
5518930 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 53268814 - 53268863
Alignment:
| Q |
151 |
ataaagagtcaaaaata-ttttcttttataataataatttccttttttgg |
199 |
Q |
| |
|
||||| ||||||||| | |||||||||||||||||||||| ||||||||| |
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|
| T |
53268814 |
ataaaaagtcaaaaacaattttcttttataataataattttcttttttgg |
53268863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 33899098 - 33899058
Alignment:
| Q |
157 |
agtcaaaaatattttcttttataataataatttcctttttt |
197 |
Q |
| |
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|||||||||||||| ||||||| ||||||||||||||||| |
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|
| T |
33899098 |
agtcaaaaatatttctttttatagtaataatttcctttttt |
33899058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 18220523 - 18220483
Alignment:
| Q |
158 |
gtcaaaaatattttcttttataataataatttccttttttg |
198 |
Q |
| |
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|||||||| | |||||||||||||||||| ||||||||||| |
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| T |
18220523 |
gtcaaaaacaatttcttttataataataaattccttttttg |
18220483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 26966660 - 26966624
Alignment:
| Q |
95 |
cagggcacgggttaagggtactaaaaaatgaaattat |
131 |
Q |
| |
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||||||||||||||||| |||||||||| |||||||| |
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| T |
26966660 |
cagggcacgggttaaggatactaaaaaaggaaattat |
26966624 |
T |
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