View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8096_low_14 (Length: 234)

Name: NF8096_low_14
Description: NF8096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8096_low_14
NF8096_low_14
[»] chr5 (7 HSPs)
chr5 (1-228)||(39675806-39676033)
chr5 (2-194)||(10866234-10866426)
chr5 (2-194)||(10873879-10874071)
chr5 (2-194)||(10878950-10879142)
chr5 (2-194)||(10884021-10884213)
chr5 (2-200)||(10887942-10888140)
chr5 (2-177)||(10045800-10045975)


Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 39675806 - 39676033
Alignment:
Q  1 tttttcttcggtctcttcttctccgtcgcatactttcttcttaaccggtggcgtgaaaagatccgaacctctacacctctccatgtcctcacaatctccg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39675806 tttttcttcggtctcttcttctccgtcgcatactttcttcttaaccggtggcgtgaaaagatccgaacctctacacctctccatgtcctcacaatctccg 39675905  T
Q  101 agattcttgctctagtttccctcattgcttgccttatctaccttacggctttcttcggcgttgccttcatccttcattacgatgaagaagaagatgaagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  39675906 agattcttgctctagtttccctcattgcttgccttatctaccttacggctttctttggcgttgccttcatccttcattacgatgaagaagaagatgaagt 39676005  T
Q  201 tgctgacattgctgcgaaaaccaccaaa 228  Q
    ||||||||||||||||||||||||||||    
T  39676006 tgctgacattgctgcgaaaaccaccaaa 39676033  T

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Target: chr5; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 2 - 194
Target Start/End: Original strand, 10866234 - 10866426
Alignment:
Q  2 ttttcttcggtctcttcttctccgtcgcatactttcttcttaaccggtggcgtgaaaagatccgaacctctacacctctccatgtcctcacaatctccga 101  Q
    ||||||| |||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||    
T  10866234 ttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacgtcctcacaatctctga 10866333  T
Q  102 gattcttgctctagtttccctcattgcttgccttatctaccttacggctttcttcggcgttgccttcatccttcattacgatgaagaagaaga 194  Q
    |||||| ||||| ||||||||||| |||| | || |||||||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  10866334 gattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacgatgaagaagaaga 10866426  T

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Target: chr5; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 2 - 194
Target Start/End: Complemental strand, 10874071 - 10873879
Alignment:
Q  2 ttttcttcggtctcttcttctccgtcgcatactttcttcttaaccggtggcgtgaaaagatccgaacctctacacctctccatgtcctcacaatctccga 101  Q
    ||||||| |||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||    
T  10874071 ttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacgtcctcacaatctctga 10873972  T
Q  102 gattcttgctctagtttccctcattgcttgccttatctaccttacggctttcttcggcgttgccttcatccttcattacgatgaagaagaaga 194  Q
    |||||| ||||| ||||||||||| |||| | || |||||||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  10873971 gattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacgatgaagaagaaga 10873879  T

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Target: chr5; HSP #4
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 2 - 194
Target Start/End: Complemental strand, 10879142 - 10878950
Alignment:
Q  2 ttttcttcggtctcttcttctccgtcgcatactttcttcttaaccggtggcgtgaaaagatccgaacctctacacctctccatgtcctcacaatctccga 101  Q
    ||||||| |||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||    
T  10879142 ttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacgtcctcacaatctctga 10879043  T
Q  102 gattcttgctctagtttccctcattgcttgccttatctaccttacggctttcttcggcgttgccttcatccttcattacgatgaagaagaaga 194  Q
    |||||| ||||| ||||||||||| |||| | || |||||||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  10879042 gattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacgatgaagaagaaga 10878950  T

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Target: chr5; HSP #5
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 2 - 194
Target Start/End: Complemental strand, 10884213 - 10884021
Alignment:
Q  2 ttttcttcggtctcttcttctccgtcgcatactttcttcttaaccggtggcgtgaaaagatccgaacctctacacctctccatgtcctcacaatctccga 101  Q
    ||||||| |||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||    
T  10884213 ttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacgtcctcacaatctctga 10884114  T
Q  102 gattcttgctctagtttccctcattgcttgccttatctaccttacggctttcttcggcgttgccttcatccttcattacgatgaagaagaaga 194  Q
    |||||| ||||| ||||||||||| |||| | || |||||||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  10884113 gattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacgatgaagaagaaga 10884021  T

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Target: chr5; HSP #6
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 2 - 200
Target Start/End: Complemental strand, 10888140 - 10887942
Alignment:
Q  2 ttttcttcggtctcttcttctccgtcgcatactttcttcttaaccggtggcgtgaaaagatccgaacctctacacctctccatgtcctcacaatctccga 101  Q
    ||||||| |||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||| |||| ||    
T  10888140 ttttctttggtctcttcttctccgccgcgtactttcttcttaacaggtggcgtgaaaagatccgaacctctacacctctccacatcctcacagtctctga 10888041  T
Q  102 gattcttgctctagtttccctcattgcttgccttatctaccttacggctttcttcggcgttgccttcatccttcattacgatgaagaagaagatgaagt 200  Q
    |||| ||||| ||||||||||||| |||| | |  |||||||||  ||||||||||||  |||||||||| ||||||||||||| || ||||| |||||    
T  10888040 gattgttgctgtagtttccctcatcgcttccttcgtctaccttattgctttcttcggcactgccttcatcattcattacgatgatgatgaagacgaagt 10887942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 2 - 177
Target Start/End: Original strand, 10045800 - 10045975
Alignment:
Q  2 ttttcttcggtctcttcttctccgtcgcatactttcttcttaaccggtggcgtgaaaagatccgaacctctacacctctccatgtcctcacaatctccga 101  Q
    ||||||||||||| |||||||||||||| || ||||||||| || |||||||||| |||||||||||||| |||||||| ||||| ||||||||||| ||    
T  10045800 ttttcttcggtcttttcttctccgtcgcgtattttcttcttcacaggtggcgtgagaagatccgaacctccacacctcttcatgttctcacaatctctga 10045899  T
Q  102 gattcttgctctagtttccctcattgcttgccttatctaccttacggctttcttcggcgttgccttcatccttcat 177  Q
    ||||   | | | ||||||||||| |||| | |||| ||||||| ||||||||||||| ||| |||||| ||||||    
T  10045900 gattgccggtgttgtttccctcatagcttcctttatttaccttatggctttcttcggcattggcttcattcttcat 10045975  T

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