View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8096_low_15 (Length: 202)
Name: NF8096_low_15
Description: NF8096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8096_low_15 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 13660305 - 13660134
Alignment:
| Q |
18 |
catacaaattcgaaagttcatttttgttattgacccaagattacgatcaacaaagattcccacagagcaaggtgaagtttgcatcacattctggtttata |
117 |
Q |
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| T |
13660305 |
catacaaattcgaaagttcatttttgttattgacccaagattacgatcaacaaagattcccacagagcaaggtgaagtttgcatcacattctggtttata |
13660206 |
T |
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| Q |
118 |
tctttgtatgcaacactagttgtttcgagtgcacctaatgaacttaagtgtttatggaatggaagtataatc |
189 |
Q |
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| T |
13660205 |
tctttgtatgcaacactagttgtttcgagtgcacctaatgaacttaagtgtttatggaatggaagtataatc |
13660134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 13652805 - 13652634
Alignment:
| Q |
18 |
catacaaattcgaaagttcatttttgttattgacccaagattacgatcaacaaagattcccacagagcaaggtgaagtttgcatcacattctggtttata |
117 |
Q |
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| T |
13652805 |
catacaaattcgaaagttcattttcggtaatgtcccaagattacgatcaacaaagattcccacagagcaaggtgcagtttgcatcacattcaggtttata |
13652706 |
T |
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| Q |
118 |
tctttgtatgcaacactagttgtttcgagtgcacctaatgaacttaagtgtttatggaatggaagtataatc |
189 |
Q |
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| T |
13652705 |
tctttgtatgcaacactagttgtttcgagtgcacctaatgaacttaagtgtttatggaatggaagtataatc |
13652634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 438000 - 438134
Alignment:
| Q |
48 |
tgacccaagattacgatcaacaaagattcccacagagcaaggtgaagtttgcatcacattctggtttatatctttgtatgcaacactagttgtttcgagt |
147 |
Q |
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| T |
438000 |
tgacccaagatcacggtccacaaatattcccacagagcaaggtgcactttgcatcacattcaagtttatatctttgtatgcagtattagttgtttcgagt |
438099 |
T |
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| Q |
148 |
gcacctaatgaacttaagtgtttatggaatggaag |
182 |
Q |
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| T |
438100 |
gcaccttctgaacttagttgtttgtggaatggaag |
438134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 28608934 - 28608770
Alignment:
| Q |
18 |
catacaaattcgaaagttcatttttgttattgacccaagattacgatcaacaaagattcccacagagcaaggtgaagtttgcatcacattctggtttata |
117 |
Q |
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||||||||| ||||| |||||||||| || ||||||||||||||||||||||| | ||||||||||||||||| | |||||||||||||| ||||||| |
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| T |
28608934 |
catacaaatacgaaaattcatttttggtaaggacccaagattacgatcaacaaataatcccacagagcaaggtgcactttgcatcacattcaagtttata |
28608835 |
T |
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| Q |
118 |
tctttgtatgcaacactagttgtttcgagtgcacctaatgaacttaagtgtttatggaatggaag |
182 |
Q |
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|||||| | |||||| ||||||||| | ||||||| | ||||| ||||| ||||||||||| |
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| T |
28608834 |
tctttgaacgcaacatcagttgtttcaaatgcaccttccggacttagttgtttgtggaatggaag |
28608770 |
T |
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