View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8096_low_3 (Length: 399)

Name: NF8096_low_3
Description: NF8096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8096_low_3
NF8096_low_3
[»] chr5 (6 HSPs)
chr5 (18-376)||(40181164-40181523)
chr5 (61-349)||(38605675-38605960)
chr5 (190-278)||(40180547-40180635)
chr5 (133-269)||(41885856-41885992)
chr5 (210-341)||(38604989-38605120)
chr5 (291-333)||(41885995-41886037)
[»] chr8 (5 HSPs)
chr8 (66-349)||(44460150-44460430)
chr8 (66-349)||(44467683-44467963)
chr8 (158-346)||(44459540-44459725)
chr8 (158-346)||(44467073-44467258)
chr8 (210-349)||(34502246-34502382)
[»] chr1 (1 HSPs)
chr1 (66-349)||(46359020-46359300)
[»] chr6 (1 HSPs)
chr6 (201-349)||(410919-411068)


Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 376
Target Start/End: Complemental strand, 40181523 - 40181164
Alignment:
Q  18 cttgttgaatcaataagcactgctgttcactatgattttaatgttaaactaaggaagaaatacatatttttt-ctgtgggacatgcttaagaaaattggc 116  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||    
T  40181523 cttgttgaatcaataagcactactgttcactatgatttcaatgttaaactaaggaagaaatacatatttttttctgtgggacatgcttaagtatattggc 40181424  T
Q  117 cgctatgaaactgactttcttaacgcaaggattctaaataaactcatagaatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttc 216  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  40181423 cgctatgaaactgactttcttaatgcaaggattctcaataaactcatagaatccttctcagttatggggcagcaaggaaaggcagcacttgatgtttttc 40181324  T
Q  217 ataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgatatgatcca 316  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40181323 ataattttgacgtatttcaatgtgtgccaaatcaagatacatattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgatatgatcca 40181224  T
Q  317 ccaaacagcttctatctatcaaaagttgctgctactccatgatgatgatcaagaataata 376  Q
    |||| |||  ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40181223 ccaagcagagtctatctatcaaaagttgctgctactccatgatgatgatcaagaagaata 40181164  T

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Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 61 - 349
Target Start/End: Complemental strand, 38605960 - 38605675
Alignment:
Q  61 ttaaactaaggaagaaatacatattttttctgtgggacatgcttaagaaaattggccgctatgaaactgactttcttaacgcaaggattctaaataaact 160  Q
    ||||||||||||||||  ||||| |||||||||||||  |||||||||| |||||||  ||| |||| | | |||||||| ||   ||||| ||| | ||    
T  38605960 ttaaactaaggaagaatgacatactttttctgtgggatttgcttaagaatattggccattatcaaaccggccttcttaacccacccattctcaatcacct 38605861  T
Q  161 catagaatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttat 260  Q
    |||| ||| ||||||  |||| || |   |||| ||| | |||||||| ||||||||||  ||||| || ||||||||||||||||||||||| || |||    
T  38605860 catacaattcttctcaattataggtcgagaaggcaagtctgcacttgaagtttttcatatgtttgaggtctttcaatgtgtgccaaatcaagacacatat 38605761  T
Q  261 tactatacactgcaagctcttttgaggagcacaaggtgtagtgctgatatgatccaccaaacagcttctatctatcaaaagttgctgct 349  Q
    |||| |||||| |||||||||||   || ||||| ||||||||||||||| ||||||||| |  ||||||||| |||||| ||||||||    
T  38605760 tactttacacttcaagctctttt---gaccacaacgtgtagtgctgatatcatccaccaagcctcttctatctgtcaaaacttgctgct 38605675  T

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Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 190 - 278
Target Start/End: Complemental strand, 40180635 - 40180547
Alignment:
Q  190 aaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagct 278  Q
    |||| ||||| |||||||||||||||||||| ||||| || |||||||||||||||||||||||||| |||  || |||||||||||||    
T  40180635 aagggaaggctgcacttgatgtttttcataaatttgaggtctttcaatgtgtgccaaatcaagatacatatatctttacactgcaagct 40180547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 133 - 269
Target Start/End: Original strand, 41885856 - 41885992
Alignment:
Q  133 ttcttaacgcaaggattctaaataaactcatagaatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatt 232  Q
    ||||||||||  |||||||||||||||| ||||||| ||||||  |||||||||   |||| || || ||||  |||||||||||||| ||||| |  ||    
T  41885856 ttcttaacgctcggattctaaataaactaatagaattcttctcaattatggggcgagaagggaaagctgcacacgatgtttttcataaatttgaggcttt 41885955  T
Q  233 tcaatgtgtgccaaatcaagatacttattactataca 269  Q
    |||||||| ||||||||||||||| ||||||| ||||    
T  41885956 tcaatgtgagccaaatcaagatacatattactttaca 41885992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 210 - 341
Target Start/End: Complemental strand, 38605120 - 38604989
Alignment:
Q  210 gtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgata 309  Q
    ||||||||||| ||||| || ||||| |||||||| ||||||||| | |||  || ||||||| |||||||||| | ||  ||||| || ||||||||||    
T  38605120 gtttttcataaatttgaggtctttcagtgtgtgcctaatcaagattcatatatctttacactggaagctctttttaagacaacaagttgcagtgctgata 38605021  T
Q  310 tgatccaccaaacagcttctatctatcaaaag 341  Q
    || |||| ||| | |||||||||| |||||||    
T  38605020 tgctccagcaagccgcttctatctgtcaaaag 38604989  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 333
Target Start/End: Original strand, 41885995 - 41886037
Alignment:
Q  291 acaaggtgtagtgctgatatgatccaccaaacagcttctatct 333  Q
    |||||| |||||| |||||||||||||||||| ||||||||||    
T  41885995 acaaggagtagtgatgatatgatccaccaaactgcttctatct 41886037  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 66 - 349
Target Start/End: Original strand, 44460150 - 44460430
Alignment:
Q  66 ctaaggaagaaatacatattttttctgtgggacatgcttaagaaaattggccgctatgaaactgactttcttaacgcaaggattctaaataaactcatag 165  Q
    |||||||||||  |||||||||||||||||||  |||||||| | ||||||| |||| | |||||| |||||| | | |||||||| ||| ||||| ||     
T  44460150 ctaaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagactgaccttcttagcaccaggattctcaatcaactcctac 44460249  T
Q  166 aatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattacta 265  Q
    | |||||     | |||  |   ||||||||| | | ||| || ||||||||||| ||||| | ||||||||| ||||| ||||||||||| |||  | |    
T  44460250 actcctttggattgatgttgtgccaaggaaagaccggactcgaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatcca 44460349  T
Q  266 tacactgcaagctcttttgaggagcacaaggtgtagtgctgatatgatccaccaaacagcttctatctatcaaaagttgctgct 349  Q
    ||| ||||||||| ||||||    ||||| |||||   ||||||||||||||||| | |||||||| | ||||||| |||||||    
T  44460350 tacgctgcaagcttttttgac---cacaaagtgtaccactgatatgatccaccaagccgcttctatgtgtcaaaagatgctgct 44460430  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 66 - 349
Target Start/End: Original strand, 44467683 - 44467963
Alignment:
Q  66 ctaaggaagaaatacatattttttctgtgggacatgcttaagaaaattggccgctatgaaactgactttcttaacgcaaggattctaaataaactcatag 165  Q
    |||||||||||  |||||||||||||||||||  |||||||| | ||||||| |||| | |||||| |||||| | | |||||||| ||| ||||| ||     
T  44467683 ctaaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagactgaccttcttagcaccaggattctcaatcaactcctac 44467782  T
Q  166 aatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattacta 265  Q
    | |||||     | |||  |   ||||||||| | | ||| || ||||||||||| ||||| | ||||||||| ||||| ||||||||||| |||  | |    
T  44467783 actcctttggattgatgttgtgccaaggaaagaccggactcgaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatcca 44467882  T
Q  266 tacactgcaagctcttttgaggagcacaaggtgtagtgctgatatgatccaccaaacagcttctatctatcaaaagttgctgct 349  Q
    ||| ||||||||| ||||||    ||||| |||||   ||||||||||||||||| | |||||||| | ||||||| |||||||    
T  44467883 tacgctgcaagcttttttgac---cacaaagtgtaccactgatatgatccaccaagccgcttctatgtgtcaaaagatgctgct 44467963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 158 - 346
Target Start/End: Original strand, 44459540 - 44459725
Alignment:
Q  158 actcatagaatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatact 257  Q
    ||||||| ||||||||||  |||||||||   |||| ||  | |||||||| ||||||||||  ||||| |  ||||| |||||||||||||| |||||     
T  44459540 actcatacaatccttctcaattatggggcgagaaggtaaatctgcacttgaagtttttcatatgtttgaggcctttcagtgtgtgccaaatcacgataca 44459639  T
Q  258 tattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgatatgatccaccaaacagcttctatctatcaaaagttgct 346  Q
    ||||||| ||| ||||||||||||||   || ||| |  |||||| || |||||||||| ||| |||||||||||| ||| ||| ||||    
T  44459640 tattactttactctgcaagctctttt---gaccacgacctgtagtactcatatgatccatcaagcagcttctatctgtcagaagatgct 44459725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 158 - 346
Target Start/End: Original strand, 44467073 - 44467258
Alignment:
Q  158 actcatagaatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatact 257  Q
    ||||||| ||||||||||  |||||||||   |||| ||  | |||||||| ||||||||||  ||||| |  ||||| |||||||||||||| |||||     
T  44467073 actcatacaatccttctcaattatggggcgagaaggtaaatctgcacttgaagtttttcatatgtttgaggcctttcagtgtgtgccaaatcacgataca 44467172  T
Q  258 tattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgatatgatccaccaaacagcttctatctatcaaaagttgct 346  Q
    ||||||| ||| ||||||||||||||   || ||| |  |||||| || |||||||||| ||| |||||||||||| ||| ||| ||||    
T  44467173 tattactttactctgcaagctctttt---gaccacgacctgtagtactcatatgatccatcaagcagcttctatctgtcagaagatgct 44467258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 210 - 349
Target Start/End: Complemental strand, 34502382 - 34502246
Alignment:
Q  210 gtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgata 309  Q
    ||||||||||| ||||| | ||||||||||||||| |||| |||||| ||   || ||||||| ||||||||||   || |||||| ||||   ||||||    
T  34502382 gtttttcataaatttgaggcatttcaatgtgtgccgaatcgagatacatacacctttacactgaaagctctttt---gatcacaagatgtatcactgata 34502286  T
Q  310 tgatccaccaaacagcttctatctatcaaaagttgctgct 349  Q
    ||| ||||||| | |||||||||| ||||||| |||||||    
T  34502285 tgacccaccaagccgcttctatctgtcaaaagatgctgct 34502246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 66 - 349
Target Start/End: Original strand, 46359020 - 46359300
Alignment:
Q  66 ctaaggaagaaatacatattttttctgtgggacatgcttaagaaaattggccgctatgaaactgactttcttaacgcaaggattctaaataaactcatag 165  Q
    |||||||||||  |||||||||||||||||||  |||||||| | ||||||| |||| | |||||| |||||| | | |||||||| ||| ||||| ||     
T  46359020 ctaaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagactgaccttcttagcaccaggattctcaatcaactcctac 46359119  T
Q  166 aatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattacta 265  Q
    | |||||     | |||  |   ||||||||| | | ||| || ||||||||||| ||||| | ||||||||| ||||| ||||||||||| |||  | |    
T  46359120 actcctttggattgatgttgtgccaaggaaagaccggactcgaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatcca 46359219  T
Q  266 tacactgcaagctcttttgaggagcacaaggtgtagtgctgatatgatccaccaaacagcttctatctatcaaaagttgctgct 349  Q
    ||| ||||||||| ||||||    ||||| |||||   ||||||||||||||||| | |||||||| | ||||||| |||||||    
T  46359220 tacgctgcaagcttttttgac---cacaaagtgtaccactgatatgatccaccaagccgcttctatgtgtcaaaagatgctgct 46359300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 201 - 349
Target Start/End: Original strand, 410919 - 411068
Alignment:
Q  201 gcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgaggagcacaaggtgta 300  Q
    |||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||| ||   || |||| || |||||||||| || |  ||||| || |    
T  410919 gcacttgaagtttttcataaatttgaggtatttcaatgtgttccaaatcaagatacatacatctttacattggaagctctttttagaacaacaagttgca 411018  T
Q  301 gtgc-tgatatgatccaccaaacagcttctatctatcaaaagttgctgct 349  Q
    || | | ||||| |||| ||| | |||||||||| ||||||| |||||||    
T  411019 gtactttatatgctccagcaagcggcttctatctgtcaaaagatgctgct 411068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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