View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8096_low_4 (Length: 393)

Name: NF8096_low_4
Description: NF8096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8096_low_4
NF8096_low_4
[»] chr4 (3 HSPs)
chr4 (18-151)||(9499009-9499142)
chr4 (305-375)||(9499308-9499378)
chr4 (22-58)||(56201184-56201220)
[»] chr8 (3 HSPs)
chr8 (18-145)||(20293145-20293267)
chr8 (18-145)||(21079776-21079898)
chr8 (18-84)||(13955753-13955819)
[»] chr6 (4 HSPs)
chr6 (26-148)||(19058791-19058908)
chr6 (18-73)||(29355339-29355394)
chr6 (23-88)||(7492158-7492223)
chr6 (44-78)||(29355313-29355347)
[»] chr7 (5 HSPs)
chr7 (18-145)||(18846129-18846251)
chr7 (18-84)||(15660354-15660420)
chr7 (18-87)||(36692262-36692331)
chr7 (87-148)||(47790230-47790291)
chr7 (18-52)||(47790300-47790334)
[»] chr2 (2 HSPs)
chr2 (18-83)||(23218993-23219058)
chr2 (24-87)||(44672756-44672821)
[»] chr1 (4 HSPs)
chr1 (18-83)||(20039576-20039641)
chr1 (20-83)||(34624211-34624274)
chr1 (18-94)||(29403621-29403698)
chr1 (50-126)||(11375416-11375487)
[»] scaffold0692 (1 HSPs)
scaffold0692 (22-58)||(5006-5042)
[»] chr5 (1 HSPs)
chr5 (50-78)||(43575459-43575487)


Alignment Details
Target: chr4 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 9499009 - 9499142
Alignment:
Q  18 agaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcctttcatttcagttttctgttgttatcattgtaagagct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9499009 agaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcctttcatttcagttttctgttgttatcattgtaagagct 9499108  T
Q  118 ttcagctcaccgttttccagttacataatacctt 151  Q
    ||||||||||||||||||||||||||||||||||    
T  9499109 ttcagctcaccgttttccagttacataatacctt 9499142  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 305 - 375
Target Start/End: Original strand, 9499308 - 9499378
Alignment:
Q  305 attatggaaagaattactacacaaaatagcccaatgctatatttatacattgcatgattttaagttggatg 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9499308 attatggaaagaattactacacaaaatagcccaatgctatatttatacattgcatgattttaagttggatg 9499378  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 56201184 - 56201220
Alignment:
Q  22 gttctctctggtctaggagcttagctctggtaggagt 58  Q
    |||||||||||||||||||| ||||||||||||||||    
T  56201184 gttctctctggtctaggagcctagctctggtaggagt 56201220  T

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Target: chr8 (Bit Score: 64; Significance: 7e-28; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 20293267 - 20293145
Alignment:
Q  18 agaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcctttcatttcagttttctgttgttatcattgtaagagct 117  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||| | || ||| |||||||     
T  20293267 agaagttctctcttgtataggagcttagctctggtaggagttctctgaactctggtttatcct-----ttcagttttctgttttcataattataagagcc 20293173  T
Q  118 ttcagctcaccgttttccagttacataa 145  Q
    || |||||||| |||||| |||| ||||    
T  20293172 ttgagctcaccattttcctgttaaataa 20293145  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 21079898 - 21079776
Alignment:
Q  18 agaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcctttcatttcagttttctgttgttatcattgtaagagct 117  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||| | || ||| |||||||     
T  21079898 agaagttctctcttgtataggagcttagctctggtaggagttctctgaactctggtttatcct-----ttcagttttctgttttcataattataagagcc 21079804  T
Q  118 ttcagctcaccgttttccagttacataa 145  Q
    || |||||||| |||||| |||| ||||    
T  21079803 ttgagctcaccattttcctgttaaataa 21079776  T

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Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 13955819 - 13955753
Alignment:
Q  18 agaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcctttca 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  13955819 agaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggttaatcctttca 13955753  T

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Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 26 - 148
Target Start/End: Complemental strand, 19058908 - 19058791
Alignment:
Q  26 tctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcctttcatttcagttttctgttgttatcattgtaagagctttcagctc 125  Q
    |||||||||||||||| |||||||||||||||||||||   |||||||||||||||||| ||     ||||||| | ||||||||||||||||| |||||    
T  19058908 tctctggtctaggagcctagctctggtaggagttctcttccctctggtttatcctttcaatt-----ttctgttttcatcattgtaagagctttgagctc 19058814  T
Q  126 accgttttccagttacataatac 148  Q
    ||| ||||||||||| |||||||    
T  19058813 accattttccagttaaataatac 19058791  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 29355394 - 29355339
Alignment:
Q  18 agaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggt 73  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  29355394 agaagttctatctggtctaggagcttagctctggtaggagttctctgagctctggt 29355339  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 7492158 - 7492223
Alignment:
Q  23 ttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcctttcatttc 88  Q
    |||||||||||||| ||||||||||||||||||  ||||||||| ||| ||||||| |||| ||||    
T  7492158 ttctctctggtctacgagcttagctctggtaggtattctctgaattctagtttatcttttcgtttc 7492223  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 78
Target Start/End: Complemental strand, 29355347 - 29355313
Alignment:
Q  44 agctctggtaggagttctctgaactctggtttatc 78  Q
    |||||||||||||||||||||||||||||||||||    
T  29355347 agctctggtaggagttctctgaactctggtttatc 29355313  T

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Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 18846251 - 18846129
Alignment:
Q  18 agaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcctttcatttcagttttctgttgttatcattgtaagagct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||     || |||||  |||||||| | ||| |||||||||||    
T  18846251 agaagttctctctggtctaggagcttagctctggtaggagttctcagaactctggttta-----tcttttcaactttctgttttcatctttgtaagagct 18846157  T
Q  118 ttcagctcaccgttttccagttacataa 145  Q
    || |||||| |  |||||||||| ||||    
T  18846156 ttgagctcatcactttccagttaaataa 18846129  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 15660354 - 15660420
Alignment:
Q  18 agaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcctttca 84  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  15660354 agaagttctttctggtctaggagcttagctctggtaggagttctctgaactctggtttatcttttca 15660420  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 36692262 - 36692331
Alignment:
Q  18 agaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcctttcattt 87  Q
    |||||||||||||| ||||||||||||||||||||||||||||   |||||||||||   ||||||||||    
T  36692262 agaagttctctctgttctaggagcttagctctggtaggagttcatagaactctggttacccctttcattt 36692331  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 148
Target Start/End: Complemental strand, 47790291 - 47790230
Alignment:
Q  87 tcagttttctgttgttatcattgtaagagctttcagctcaccgttttccagttacataatac 148  Q
    ||||||||||||| | ||| ||||||||||||| |||||| | ||||||||||| |||||||    
T  47790291 tcagttttctgttttcatctttgtaagagctttgagctcatcattttccagttaaataatac 47790230  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 47790334 - 47790300
Alignment:
Q  18 agaagttctctctggtctaggagcttagctctggt 52  Q
    ||||||||||||||||||||||||||| |||||||    
T  47790334 agaagttctctctggtctaggagcttaactctggt 47790300  T

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Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 23219058 - 23218993
Alignment:
Q  18 agaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcctttc 83  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  23219058 agaagttctctctgatctaggagcttagctctggtaggagttctctgaactctggtttatcatttc 23218993  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 44672821 - 44672756
Alignment:
Q  24 tctctctggtctaggagcttagctctgg-taggagttctctgaactctggtttatc-ctttcattt 87  Q
    |||||||||||||||||| ||||||||| |||||||||   ||||||||||||||| |||||||||    
T  44672821 tctctctggtctaggagcatagctctggttaggagttcatagaactctggtttatctctttcattt 44672756  T

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Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 20039576 - 20039641
Alignment:
Q  18 agaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcctttc 83  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  20039576 agaagttctttctggtctaggagcttagctctggtaggagttctctaaactctggtttatcatttc 20039641  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 34624274 - 34624211
Alignment:
Q  20 aagttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatcctttc 83  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||    
T  34624274 aagttgtctctggtctaggagcttagctctggtaggagttctctgaactatggttaatcatttc 34624211  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 29403698 - 29403621
Alignment:
Q  18 agaagttctctctggtctaggagcttagctctggtaggagttctctgaactctggtttatccttt-catttcagtttt 94  Q
    |||||||||||||||||| ||||||| |||| ||||| |||||||||||| |||||||||| ||| ||||||||||||    
T  29403698 agaagttctctctggtcttggagcttggctcgggtagaagttctctgaaccctggtttatcatttccatttcagtttt 29403621  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 50 - 126
Target Start/End: Complemental strand, 11375487 - 11375416
Alignment:
Q  50 ggtaggagttctctgaactctggtttatcctttcatttcagttttctgttgttatcattgtaagagctttcagctca 126  Q
    ||||||||||||||||||||||||||||||     || |||||||||||| | ||||| ||||||||||| ||||||    
T  11375487 ggtaggagttctctgaactctggtttatcc-----ttccagttttctgttttcatcatggtaagagctttgagctca 11375416  T

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Target: scaffold0692 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 5042 - 5006
Alignment:
Q  22 gttctctctggtctaggagcttagctctggtaggagt 58  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  5042 gttctctctagtctaggagcctagctctggtaggagt 5006  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 78
Target Start/End: Original strand, 43575459 - 43575487
Alignment:
Q  50 ggtaggagttctctgaactctggtttatc 78  Q
    |||||||||||||||||||||||||||||    
T  43575459 ggtaggagttctctgaactctggtttatc 43575487  T

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