View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8096_low_5 (Length: 383)
Name: NF8096_low_5
Description: NF8096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8096_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 79 - 370
Target Start/End: Complemental strand, 39036869 - 39036580
Alignment:
| Q |
79 |
gtttgtctgtttccaagttctaacaccacaccatcactcataagggttatcataactctttctccatctggttgttaaattcataacgttgttgtgtatc |
178 |
Q |
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| T |
39036869 |
gtttgtctgtttccaagttctaacaccacaccatcactcataagggttatcataactctttctccatctggttgttaaattcataacgttgttgtgtatc |
39036770 |
T |
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| Q |
179 |
cagtgaaattaaataaaacattctcnnnnnnngtctatgtaactctgtattaatattgctaccttaggggagctgaattatattgcatggtacgtactac |
278 |
Q |
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| T |
39036769 |
cagtgaaattaaataaaacattctctttttttgtctatgtaactctgtat--atattgctaccttaggggagctgaattatattgcatggtacgtactac |
39036672 |
T |
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| Q |
279 |
tatgtttatgtctcaatcgactttaattataattcctaacttaaggatcacggcatctaagtatcattcagtgatagcaaccttcttgctct |
370 |
Q |
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| T |
39036671 |
tatatttatgtctcaatcgactttaattataattcctaacttaaggatcacggcatctaagtatcattcagtgatagcaaccttcttgctct |
39036580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 39036914 - 39036874
Alignment:
| Q |
1 |
aataatataaaaatctaattccaataatttgttcatgttgt |
41 |
Q |
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| T |
39036914 |
aataatataagaatctaattccaataatttgttcatgttgt |
39036874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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