View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8096_low_6 (Length: 370)
Name: NF8096_low_6
Description: NF8096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8096_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 342
Target Start/End: Original strand, 40343324 - 40343645
Alignment:
| Q |
16 |
catcaatcgtaagaaagaatgagatcaaatcctatttttgagtgtaaggttaaaataaccaaaggtttttatttcacattttgggcttgaattgaaatga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
40343324 |
catcaatcgtaagaaagaatgagatcaagtcctatttttgagtgtaaggttaaaataaccaaaggtttttatttcacattttggggttgaattgaaatga |
40343423 |
T |
|
| Q |
116 |
tggaagagaacgggccactttttattatgtgaatattttttggttag-tttcaaatgaaaataaaagattggaaaagaaattggatgggatacaacatcg |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
40343424 |
tggaagagaacgggccactttttattatgtgaatattttttggttagttttcaaatgaaaataaaagattggaaaagaaattggatgggaaacaacatcg |
40343523 |
T |
|
| Q |
215 |
tcccatcttcctagttcttacatcacaccaaataccgaatcacattcacataacgtattcattattttagacatgactcaacagaagtagtttacattaa |
314 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40343524 |
tcccatcttcctagttcttacatcataccaaataccgaatcaca-tcaca-----tattcattattttagacatgactcaacagaagtagtttacattaa |
40343617 |
T |
|
| Q |
315 |
tgcaactcatatacgaaatcttttcata |
342 |
Q |
| |
|
||||||||||||||||||| |||||||| |
|
|
| T |
40343618 |
tgcaactcatatacgaaatattttcata |
40343645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University