View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8096_low_7 (Length: 362)
Name: NF8096_low_7
Description: NF8096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8096_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 111 - 351
Target Start/End: Original strand, 43729288 - 43729530
Alignment:
| Q |
111 |
tactagaaagcccataatataaaagttaacgggtcaaagaggtatcataatccagtgcccagttgttgtttcttcaacctacaaccaacgccaacctgca |
210 |
Q |
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| T |
43729288 |
tactagaaagcccataatataaaagttaacgggtcaaagaggtatcataatccagtgcccagttgttgtttcttcaacctacaaccaacaccaacctgca |
43729387 |
T |
|
| Q |
211 |
ctgcaatggtgtgcggcgcattgaaaaacttatca--nnnnnnnnnnacaagttttttcccatcttctctctgttcatctttaacatctatgaagaaaaa |
308 |
Q |
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| T |
43729388 |
ctgcaatggtgtgcggcgcattgaaaagcttatcattttttttttttacaagttttttcccatcttctctctgttcatctttaacatctatgaagaaaaa |
43729487 |
T |
|
| Q |
309 |
tggtaagtgctgaagaaaaaatgtgtaggaaattggagaataa |
351 |
Q |
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||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
43729488 |
tggtaagtgctaaagaaaaaacgtgtaggaaattggagaataa |
43729530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 43729178 - 43729226
Alignment:
| Q |
1 |
ttttaaattcattaagtcgatttaacttttggaacggtgattataattt |
49 |
Q |
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| T |
43729178 |
ttttaaattcattaagtcgatttaacttttggaacggtgattataattt |
43729226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 173; Significance: 6e-93; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 111 - 351
Target Start/End: Original strand, 25698368 - 25698612
Alignment:
| Q |
111 |
tactagaaagcccataatataaaagttaacgggtcaaagaggtatcata--atccagtgcccagttgttgtttcttcaacctacaaccaacgccaacctg |
208 |
Q |
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| T |
25698368 |
tactagaaagcccataatataaaagttaacgggtcaaagaggtatcatataatccagtgcccagttgttgtttcttcaacctacaaccaacgccaacctg |
25698467 |
T |
|
| Q |
209 |
cactgcaatggtgtgcggcgcattgaaaaacttatca--nnnnnnnnnnacaagttttttcccatcttctctctgttcatctttaacatctatgaagaaa |
306 |
Q |
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||| ||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25698468 |
cacggcaatggtgtgcggcgcattgaaaagcttatcatttttattttttacaagttctttcccatcttctctctgttcatctttaacatctatgaagaaa |
25698567 |
T |
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| Q |
307 |
aatggtaagtgctgaagaaaaaatgtgtaggaaattggagaataa |
351 |
Q |
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| T |
25698568 |
aatggtaagtgctgaagaaaaaacatgtaggaaattggagaataa |
25698612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 25698257 - 25698305
Alignment:
| Q |
1 |
ttttaaattcattaagtcgatttaacttttggaacggtgattataattt |
49 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
25698257 |
tttttaattcattaagtcgatttaacttttggaacggtgattatgattt |
25698305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 351
Target Start/End: Complemental strand, 27649320 - 27649272
Alignment:
| Q |
304 |
aaaaatggtaagtgctgaagaaaaa-atgtgtaggaaattggagaataa |
351 |
Q |
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|
||||||||||||| |||||| |||| ||||||||||||||||||||||| |
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| T |
27649320 |
aaaaatggtaagtactgaagcaaaagatgtgtaggaaattggagaataa |
27649272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 351
Target Start/End: Complemental strand, 34009929 - 34009881
Alignment:
| Q |
304 |
aaaaatggtaagtgctgaagaaaaa-atgtgtaggaaattggagaataa |
351 |
Q |
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||||||||||||| ||| || |||| ||||||||||||||||||||||| |
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| T |
34009929 |
aaaaatggtaagtactggagcaaaagatgtgtaggaaattggagaataa |
34009881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 351
Target Start/End: Original strand, 13253610 - 13253658
Alignment:
| Q |
304 |
aaaaatggtaagtgctgaagaaaaa-atgtgtaggaaattggagaataa |
351 |
Q |
| |
|
||||||||||| | |||||| |||| ||||||||||||||||||||||| |
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|
| T |
13253610 |
aaaaatggtaaatactgaagcaaaagatgtgtaggaaattggagaataa |
13253658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 351
Target Start/End: Original strand, 39141660 - 39141708
Alignment:
| Q |
304 |
aaaaatggtaagtgctgaagaaaaa-atgtgtaggaaattggagaataa |
351 |
Q |
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||||||||||||| ||||| |||| ||||||||||||||||||||||| |
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| T |
39141660 |
aaaaatggtaagtactgaaacaaaagatgtgtaggaaattggagaataa |
39141708 |
T |
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