View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8096_low_9 (Length: 331)
Name: NF8096_low_9
Description: NF8096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8096_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 319
Target Start/End: Original strand, 5546003 - 5546304
Alignment:
| Q |
18 |
caaacataatagagagaagaatgaaagtaatagaatagtgaaaatgaatgatttttgtgaatatataccagcatgaggtaagaaggggagtggcggaccc |
117 |
Q |
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| T |
5546003 |
caaacataatagagagaagaatgtaagtaatagaatagtgaaaatgaatgatttttgtgaatatataccagcatgaggtaagaaggtgagtggcggaccc |
5546102 |
T |
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| Q |
118 |
tgcaaatggggtcaccaagcatgtcggtgaagagagaaagttggttactaggtccaacttcacatgtcctttcaactgcttctactctttctttgtcttt |
217 |
Q |
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| T |
5546103 |
tgcaaatggggtcaccaagcatgtcggtgaagagagaaagttggttactaggtccaacttcacatgtcctttcaactgcttctactctttctttgtcttt |
5546202 |
T |
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| Q |
218 |
attaacttcgaattctcgaacaatcacactaacggatacatcaattctcataattgcaagtatatatgattctatagaagaaaaaagaatgggagaataa |
317 |
Q |
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| T |
5546203 |
attaacttcgaattctcgaacaatcacactaacggatacatcaactctcataattgcaagtatatatgattctatagaagaaaaaagaatgggagaataa |
5546302 |
T |
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| Q |
318 |
tg |
319 |
Q |
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|| |
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| T |
5546303 |
tg |
5546304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 221
Target Start/End: Complemental strand, 39918108 - 39917998
Alignment:
| Q |
111 |
cggaccctgcaaatggggtcaccaagcatgtcggtgaagagagaaagttggttactaggtccaacttcacatgtcctttcaactgcttctactctttctt |
210 |
Q |
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| T |
39918108 |
cggactctgcaaatagggtcaccgtgcaagtcggtgaagagggaaagcttaccactgggtccaacttcacatattttttcaactgcttcaacactttctc |
39918009 |
T |
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| Q |
211 |
tgtctttatta |
221 |
Q |
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| T |
39918008 |
tatctttatta |
39917998 |
T |
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