View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8097_high_1 (Length: 425)
Name: NF8097_high_1
Description: NF8097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8097_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 18 - 418
Target Start/End: Original strand, 39873297 - 39873698
Alignment:
| Q |
18 |
gaaactagctagctagtgctccaattgaaatagcaagttatacattcattcatagtggtgaaatgaacgaaaaacaaatcaaagctgtgaatcaaagcca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39873297 |
gaaactagctagctagtgctccaattgaaatagcaagttatacattcattcatagtggtgaaatgaacgaaaaacaaatcaaagctgtgaatcaaagcca |
39873396 |
T |
|
| Q |
118 |
ctcgatcttaaaataagattgcatctttttccttcttccccctaccatctttaatattctaaatcctactaacgaaacnnnnnnnn-gaaagagcaaaac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
39873397 |
ctcgatcttaaaataagattgcatctttttccttcttccccctaccatctttaatattctaaatcctactaacgaaactttttttttgaaagagcaaaac |
39873496 |
T |
|
| Q |
217 |
ttcttaaatggtccacagttaacaatgtgcataaagaacactaaaatttacgaaaactcacaattcttcttcaggttcattctcgagagcatttttggta |
316 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39873497 |
ttcttaaatggtccacagttaacaatgtgcataaagaacactaaaatttacgaaaactcacaattcttcttcaggttcattctcgagagcatttttggta |
39873596 |
T |
|
| Q |
317 |
atacactcaaaagcagcctcaacattaaaaccctcctttgcagaggtctcaaagtatggtatattccccttggaagcacaccatgcctttgctttcttct |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39873597 |
atacactcaaaagcagcctcaacattaaaaccctcctttgcagaggtctcaaagtatggtatattccccttggaagcacaccatgcctttgctttcttct |
39873696 |
T |
|
| Q |
417 |
ca |
418 |
Q |
| |
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|| |
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|
| T |
39873697 |
ca |
39873698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 26 - 418
Target Start/End: Original strand, 43838639 - 43839032
Alignment:
| Q |
26 |
ctagctagtgctccaattgaaatagcaagttatacattcattcatagtggtgaaatgaacgaaaaacaaatcaaagctgtgaatcaaagccactcgatct |
125 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||| |||||||||||| ||||| |||| |
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| T |
43838639 |
ctagctagtgctccaattgaaatagcaagttatacattcattcgtagtggtaaaatgaacgaa---caaatcaaagttgtgaatcaaagtcactctatct |
43838735 |
T |
|
| Q |
126 |
taaaataagattgcatctttttccttcttccccctaccatctttaatattctaaatcctactaacgaaacnnnnnnnn---gaaagagcaaaacttctta |
222 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| | |||||||||||||||||| |
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| T |
43838736 |
taaaataagattgcatctttttccttctcccccctaccatctttaatactctaaatcctactaacaattttttatttttttgaaagagcaaaacttcttg |
43838835 |
T |
|
| Q |
223 |
aatggtccacagttaacaatgtgcataaagaa-cactaaaatttacgaaaactcacaattcttcttcaggttcattctcgagagcatttttggtaataca |
321 |
Q |
| |
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||||||||||||||||| ||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
43838836 |
aatggtccacagttaacgatgtgcataaaaaaacactaaaatttatgaaaactcacaattcttcttcaggttcattcttgagagcatttttggtaataca |
43838935 |
T |
|
| Q |
322 |
ctcaaaagcagcctcaacattaaaaccctcctttgcagaggtctcaaagtatggtatattccccttggaagcacaccatgcctttgctttcttctca |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43838936 |
ctcaaaagcagcctcaacattaaaaccctcctttgcagaggtctcaaagtatggtatattccccttggaagcacaccatgcctttgctttcttctca |
43839032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 268 - 418
Target Start/End: Complemental strand, 3468776 - 3468626
Alignment:
| Q |
268 |
gaaaactcacaattcttcttcaggttcattctcgagagcatttttggtaatacactcaaaagcagcctcaacattaaaaccctcctttgcagaggtctca |
367 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||| |||||||| | ||||||| |||||||| ||||||||||| || || ||||| ||||||||| |
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| T |
3468776 |
gaaaactcacatttcttcttcaggttcattcttgagtgcattttttgctatacactggaaagcagcttcaacattaaatccttcttttgcggaggtctca |
3468677 |
T |
|
| Q |
368 |
aagtatggtatattccccttggaagcacaccatgcctttgctttcttctca |
418 |
Q |
| |
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||||||||||| || ||||| |||||||||||||||||||||||||||||| |
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| T |
3468676 |
aagtatggtatgtttccctttgaagcacaccatgcctttgctttcttctca |
3468626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 417
Target Start/End: Complemental strand, 43948956 - 43948868
Alignment:
| Q |
329 |
gcagcctcaacattaaaaccctcctttgcagaggtctcaaagtatggtatattccccttggaagcacaccatgcctttgctttcttctc |
417 |
Q |
| |
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||||| |||||||| || |||| |||||||| ||||||||||| || |||||||| || ||||||||||| | |||||||||||||| |
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| T |
43948956 |
gcagcatcaacattgtaatcctcttttgcagatgtctcaaagtagggaatattcccttttgaagcacaccagtcatttgctttcttctc |
43948868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 418
Target Start/End: Original strand, 14292528 - 14292611
Alignment:
| Q |
335 |
tcaacattaaaaccctcctttgcagaggtctcaaagtatggtatattccccttggaagcacaccatgcctttgctttcttctca |
418 |
Q |
| |
|
|||||||| || |||| |||||||| ||||||||||| || |||||||| || || || |||||| |||||||||||||||| |
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| T |
14292528 |
tcaacattgaagtcctcttttgcagaagtctcaaagtagggaatattcccttttgaggcgcaccatttctttgctttcttctca |
14292611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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