View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8097_high_2 (Length: 425)
Name: NF8097_high_2
Description: NF8097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8097_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 11 - 406
Target Start/End: Original strand, 31008100 - 31008487
Alignment:
| Q |
11 |
gtgagaagaaagggtagatagtagacttgttcatctatttcctaaccaaaagtatattaaaaacaaaatggtaggtggaaatattcgaatttataattat |
110 |
Q |
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| T |
31008100 |
gtgagaacaaagggtagatagtagacttgttcatctatttcctaaccaaaagtatattaaaaacaaaatggtaggtggaaatattcgaatttataattat |
31008199 |
T |
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| Q |
111 |
caatttgatgattaagtcatttgttttggaccagaagttatacagcacatgacatgagttgtttatgtaattgccaaaagactcattccaaacattgctt |
210 |
Q |
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| T |
31008200 |
caatttgatgattaagtcatttgttttggaccagaagttatacagcacatgacatgagttgtttatgtaattgccaaaagactcattccaaacattgctt |
31008299 |
T |
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| Q |
211 |
tannnnnnnngacaaaaccaaactttgcttatatagtgttctatgactagtatttttcaatttttattttatgacattaagacaaagttaaataaggtga |
310 |
Q |
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| T |
31008300 |
tattttttttgacaaaaccaaactttgcttctatagtgttctatgactagt--------atttttattttatgacattaagacaaagttaaataaggtga |
31008391 |
T |
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| Q |
311 |
attgtaagggaaataagagaaaatggactaataagttatataaaattaaattagatggtgtttggaaacctagaaagaaaccatacttgatatgca |
406 |
Q |
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| T |
31008392 |
attgtaagggaaataagagaaaatggactaataagttatataaaattaaattagatggtgtttggaaacctagaaagaaaccatacttgatatgca |
31008487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 244 - 349
Target Start/End: Original strand, 30940712 - 30940817
Alignment:
| Q |
244 |
tagtgttctatgactagtatttttcaatttttattttatgacattaagacaaagttaaataaggtgaattgtaagggaaataagagaaaatggactaata |
343 |
Q |
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| T |
30940712 |
tagtgttctatgactagtatttttccaattctattttatgacattaagacaaactaagttaagatgaattgtagcagcactaagagaaaagggattaata |
30940811 |
T |
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| Q |
344 |
agttat |
349 |
Q |
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| T |
30940812 |
agttat |
30940817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 198
Target Start/End: Original strand, 30940653 - 30940696
Alignment:
| Q |
155 |
gcacatgacatgagttgtttatgtaattgccaaaagactcattc |
198 |
Q |
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| T |
30940653 |
gcacatcacatgagttgtttatgtaattgccaaaagactcattc |
30940696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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