View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8097_high_3 (Length: 351)
Name: NF8097_high_3
Description: NF8097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8097_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 41128376 - 41128044
Alignment:
| Q |
1 |
acttaatagagtagacactatatttttatattcatcatctaaattctcaacaaaatcttgagacacaaaagtatatgacaaaaaattaatgcaagccttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41128376 |
acttaatagagtagacactatatttttatattcatcatctaaattctcaacaaaatcttgagacacaaaagtatatgacaaaaaattaatgcaagccttg |
41128277 |
T |
|
| Q |
101 |
aaagcagctcttccaacatcaacagcttcaccagttatgctgcttttatgcatatcatttagaagatcttttaatttcatacgtctaagctcttgacttc |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41128276 |
aaagcagctcttccaacatcaacagcttcaccagttatgctgcttttatgcatatcatttagaagatcttttaatttcatacgtctaagatcttgacttc |
41128177 |
T |
|
| Q |
201 |
catcaagagtcttggtagagaataaattattatgacatattttcctaagatgttgccaaagaggtgaaaatgggaggaaaactaagctaaaattgttgtg |
300 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41128176 |
catcaagagtcttggtagaaaataaattattatgacatattttcctaagatgttgccaaagaggtgaaaatgggaggaaaactaagctaaaattgttgtg |
41128077 |
T |
|
| Q |
301 |
attgtgagttgttgtgttatcaggaacagatct |
333 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |
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| T |
41128076 |
attatgagttgttgtgttatcaggaacagatct |
41128044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 41144305 - 41144637
Alignment:
| Q |
1 |
acttaatagagtagacactatatttttatattcatcatctaaattctcaacaaaatcttgagacacaaaagtatatgacaaaaaattaatgcaagccttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41144305 |
acttaatagagtagacactatatttttatattcatcatctaaattctcaacaaaatcttgagacacaaaagtatatgacaaaaaattaatgcaagccttg |
41144404 |
T |
|
| Q |
101 |
aaagcagctcttccaacatcaacagcttcaccagttatgctgcttttatgcatatcatttagaagatcttttaatttcatacgtctaagctcttgacttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||| |
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| T |
41144405 |
aaagcagctcttccaacatcaacagcttcaccagttatgctgcttttatgcatatcatttagaagatcttttaatttctttcgtctaagttcttgacttc |
41144504 |
T |
|
| Q |
201 |
catcaagagtcttggtagagaataaattattatgacatattttcctaagatgttgccaaagaggtgaaaatgggaggaaaactaagctaaaattgttgtg |
300 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41144505 |
catcaagagtcttggtagataataaattattatgacatattttcctaagatgttgccaaagaggtgaaaatgggaggaaaactaagctaaaattgttgtg |
41144604 |
T |
|
| Q |
301 |
attgtgagttgttgtgttatcaggaacagatct |
333 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |
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| T |
41144605 |
attttgagttgttgtgttatcaggaacagatct |
41144637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 333
Target Start/End: Original strand, 41119902 - 41120221
Alignment:
| Q |
14 |
gacactatatttttatattcatcatctaaattctcaacaaaatcttgagacacaaaagtatatgacaaaaaattaatgcaagccttgaaagcagctcttc |
113 |
Q |
| |
|
|||| ||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41119902 |
gacaatatatctttatattcatcatccaaagattcaacaaaatcttgagacacaaaagtatatgacaaaaaattaatgcaagccttgaaagcagctcttc |
41120001 |
T |
|
| Q |
114 |
caacatcaacagcttcaccagttatgctgcttttatgcatatcatttagaagatcttttaatttcatacgtctaagctcttgacttccatcaagagtctt |
213 |
Q |
| |
|
||| ||||||||||||||| |||| ||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
41120002 |
caatatcaacagcttcaccggttaagctgcttttatgcatatcattgagaaagtcttttaatttcatacgtctaagttcttgacttgcatcaagagtctt |
41120101 |
T |
|
| Q |
214 |
ggtagagaataaattattatgacatattttcctaagatgttgccaaagaggtgaaaatgggaggaaaactaagctaaaattgttgtgattgtgagttgtt |
313 |
Q |
| |
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| | |||||||||| ||||| |||||||| ||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
41120102 |
gttggagaataaatggttatggcatatttttctaaggtgttgccagagaggtgaaaatgggaggaagactaagctaaaattgttgtgattatgagttgtt |
41120201 |
T |
|
| Q |
314 |
gtgttatcaggaacagatct |
333 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
41120202 |
gtgttatcaggaacagatct |
41120221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 121 - 333
Target Start/End: Complemental strand, 41034195 - 41033981
Alignment:
| Q |
121 |
aacagcttcaccagttatgctgcttttatgcatatc--atttagaagatcttttaatttcatacgtctaagctcttgacttccatcaagagtcttggtag |
218 |
Q |
| |
|
|||||||| |||||||| || |||||||||||||| ||| ||||||||||| ||||||||||||||||| ||||||||| |||||||| ||||| | | |
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| T |
41034195 |
aacagctttaccagttaaactacttttatgcatatctcattgagaagatctttcaatttcatacgtctaagttcttgacttgcatcaagattcttgtttg |
41034096 |
T |
|
| Q |
219 |
agaataaattattatgacatattttcctaagatgttgccaaagaggtgaaaatgggaggaaaactaagctaaaattgttgtgattgtgagttgttgtgtt |
318 |
Q |
| |
|
|||||| || || ||| || |||| ||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| | |
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| T |
41034095 |
agaatagatgataatggcacgtttttctaaggtgttgcaaaagaggtgaaaatgggaggaaaactatgctaaaattgttgtgatcatgagttgttgtgat |
41033996 |
T |
|
| Q |
319 |
atcaggaacagatct |
333 |
Q |
| |
|
||||||||||||||| |
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| T |
41033995 |
atcaggaacagatct |
41033981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 147
Target Start/End: Complemental strand, 31130054 - 31129974
Alignment:
| Q |
67 |
aaaagtatatgacaaaaaatt-aatgcaagccttgaaagcagctcttccaacatcaacagcttcaccagttatgctgctttt |
147 |
Q |
| |
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|||||| | |||||||||||| |||| ||| ||| |||||||||||||| |||||||||||||||||| ||| ||||||||| |
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|
| T |
31130054 |
aaaagtgtttgacaaaaaattcaatg-aagtcttaaaagcagctcttcctacatcaacagcttcaccaattaagctgctttt |
31129974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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