View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8097_high_6 (Length: 269)
Name: NF8097_high_6
Description: NF8097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8097_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 31263566 - 31263328
Alignment:
| Q |
13 |
tggacatcacagaacacattaaaatcccacaaactaggattaaataaaaaagtgaagattttcattgaaaatacagaacattaaatcccacaaactagat |
112 |
Q |
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| T |
31263566 |
tggacataacagaacacattaaa-tcccacaaactaggattaaataaaaaagtgaagattttcattgaaaatacagaacattaaatcccacaaactagat |
31263468 |
T |
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| Q |
113 |
aaacatattaaatataacataacttaatacaactccacatcagctactcactttcactcgaaacatacaacattggttcagtttcttctcctgatctcca |
212 |
Q |
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| T |
31263467 |
aaacatattaaatataacataacttaatacaactccacatcagctactcactttcactcgaaacatacaacattggttcagtttcttctcctgatctcca |
31263368 |
T |
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| Q |
213 |
actaaacatttcttcaacatcatgatatttatgaaaaacc |
252 |
Q |
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| T |
31263367 |
actaaacatttcttcaacatcatgatatttatgaaaaacc |
31263328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 110
Target Start/End: Complemental strand, 31263611 - 31263531
Alignment:
| Q |
34 |
aaatcccacaaactaggattaaataa-aaaagtgaagattttcattgaaaat-acaga--acattaaatcccacaaactag |
110 |
Q |
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| T |
31263611 |
aaatctcagaaactaggattaaataaaaaaagtgaagaatttcattggacataacagaacacattaaatcccacaaactag |
31263531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 51 - 243
Target Start/End: Original strand, 15853948 - 15854145
Alignment:
| Q |
51 |
attaaataaaaaagtgaagattttcattgaaaata-cagaacattaaatcccacaaactag-ataaacatattaaatataacataacttaatacaactcc |
148 |
Q |
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| T |
15853948 |
attaaataaaagagtgaagatcatcattgaacatatcataacattgacacccacaaactaggataaacatattaaatataacataactaaatataactcc |
15854047 |
T |
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| Q |
149 |
acatcagctactcactttcactcgaaacat---acaacattggttcagtttcttctcctgatctccaactaaacatttcttcaacatcatgatattta |
243 |
Q |
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| T |
15854048 |
atatcagctactcactttcactcgatacatacaacaacatcgattcagtttcttctcttgatctccaacgaaatatttcttcaacatcaagatcttta |
15854145 |
T |
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