View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8097_low_10 (Length: 267)
Name: NF8097_low_10
Description: NF8097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8097_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 21613174 - 21613422
Alignment:
| Q |
1 |
cctcaagaactaagacaatccgtgcgtaagtacgatcaatataaatggatagctacacgaggtgtagatgaagaatctcttctcagaggacttccattgg |
100 |
Q |
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| T |
21613174 |
cctcaagaactaagacaatccgtgcgtaagtacgatcaatataaatggatagctacacgaggcgtagatgaagaatctcttctcagaggacttccattgg |
21613273 |
T |
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| Q |
101 |
atcttcgaagagacattaaacgccatctttgtcttgaactagttcgaagagtgagtcaattaatcattaaactttccttctcaattactccctccatctc |
200 |
Q |
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| T |
21613274 |
atcttcgaagagacattaaacgccacctttgtcttgaactagttcgaagagtgagtcaattaatcgttaaactttccttctcaatcactccctccgtctc |
21613373 |
T |
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| Q |
201 |
atataatgtgctgtttaagattatgtaaatgatttatcatgaacaggtt |
249 |
Q |
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| T |
21613374 |
atattatgtgctgtttaagattatgtaaatgatttatcatgaacaggtt |
21613422 |
T |
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Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 35 - 158
Target Start/End: Complemental strand, 40511296 - 40511173
Alignment:
| Q |
35 |
atcaatataaatggatagctacacgaggtgtagatgaagaatctcttctcagaggacttccattggatcttcgaagagacattaaacgccatctttgtct |
134 |
Q |
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|||||||||||||| | ||||||||||| ||||| |||||| ||| |||| ||||||||| |||||||| | ||||| || |||||||| |||||||| |
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| T |
40511296 |
atcaatataaatgggtggctacacgaggagtagaagaagaagatctgctcaaaggacttccgctggatcttaggagagaaatcaaacgccacctttgtct |
40511197 |
T |
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| Q |
135 |
tgaactagttcgaagagtgagtca |
158 |
Q |
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| T |
40511196 |
tgaactagttcgaggagtaagtca |
40511173 |
T |
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