View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8097_low_4 (Length: 355)

Name: NF8097_low_4
Description: NF8097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8097_low_4
NF8097_low_4
[»] chr5 (3 HSPs)
chr5 (159-337)||(43054463-43054641)
chr5 (1-32)||(13362245-13362276)
chr5 (1-29)||(35512146-35512174)
[»] chr1 (2 HSPs)
chr1 (1-32)||(42533019-42533050)
chr1 (1-29)||(37578190-37578218)
[»] chr6 (2 HSPs)
chr6 (1-31)||(3059253-3059283)
chr6 (1-33)||(30803855-30803887)
[»] chr3 (1 HSPs)
chr3 (1-34)||(40033858-40033891)
[»] chr8 (1 HSPs)
chr8 (1-29)||(34176443-34176471)
[»] chr4 (2 HSPs)
chr4 (1-29)||(35027996-35028024)
chr4 (1-33)||(51692921-51692953)


Alignment Details
Target: chr5 (Bit Score: 175; Significance: 4e-94; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 159 - 337
Target Start/End: Original strand, 43054463 - 43054641
Alignment:
Q  159 gtttcctatttttattttaaggagaaaaccaatcttttgtttcctattcttttcatgaatcaaatcaaaaccatttatttaagtaatctctgtcagaata 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  43054463 gtttcctatttttattttaaggagaaaaccaatcttttgtttcctattcttttcatgaatcaaatcaaaaccatttatttaagtaatctctctcagaata 43054562  T
Q  259 tattgaaacatccttaacgtagtaattcttaacaatatattgagacatccttattacctaattcttctgcgacctgaac 337  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43054563 tattgaaacatccttaacgtagtaattcttaacaatatattgagacatccttattacctaattcttctgcgacctgaac 43054641  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 13362276 - 13362245
Alignment:
Q  1 tgcaaggatgaaatacatatttaaacctatat 32  Q
    ||||||||||||||||||||||||||||||||    
T  13362276 tgcaaggatgaaatacatatttaaacctatat 13362245  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 35512174 - 35512146
Alignment:
Q  1 tgcaaggatgaaatacatatttaaaccta 29  Q
    |||||||||||||||||||||||||||||    
T  35512174 tgcaaggatgaaatacatatttaaaccta 35512146  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 42533050 - 42533019
Alignment:
Q  1 tgcaaggatgaaatacatatttaaacctatat 32  Q
    ||||||||||||||||||||||||||||||||    
T  42533050 tgcaaggatgaaatacatatttaaacctatat 42533019  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 37578218 - 37578190
Alignment:
Q  1 tgcaaggatgaaatacatatttaaaccta 29  Q
    |||||||||||||||||||||||||||||    
T  37578218 tgcaaggatgaaatacatatttaaaccta 37578190  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 3059283 - 3059253
Alignment:
Q  1 tgcaaggatgaaatacatatttaaacctata 31  Q
    |||||||||||||||||||||||||||||||    
T  3059283 tgcaaggatgaaatacatatttaaacctata 3059253  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 30803887 - 30803855
Alignment:
Q  1 tgcaaggatgaaatacatatttaaacctatatt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  30803887 tgcaaggatgaaatacatatttaaccctatatt 30803855  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 40033858 - 40033891
Alignment:
Q  1 tgcaaggatgaaatacatatttaaacctatattt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  40033858 tgcaaggatgaaatacatatttaagcctatattt 40033891  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 34176471 - 34176443
Alignment:
Q  1 tgcaaggatgaaatacatatttaaaccta 29  Q
    |||||||||||||||||||||||||||||    
T  34176471 tgcaaggatgaaatacatatttaaaccta 34176443  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 35028024 - 35027996
Alignment:
Q  1 tgcaaggatgaaatacatatttaaaccta 29  Q
    |||||||||||||||||||||||||||||    
T  35028024 tgcaaggatgaaatacatatttaaaccta 35027996  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 51692921 - 51692953
Alignment:
Q  1 tgcaaggatgaaatacatatttaaacctatatt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  51692921 tgcaaggatgaaatacatatttaagcctatatt 51692953  T

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