View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8097_low_7 (Length: 311)
Name: NF8097_low_7
Description: NF8097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8097_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 7062601 - 7062721
Alignment:
| Q |
18 |
caaagcagtctgcaccagaaaattcctgcaggcttacaaccataaatttagattcattttaagtacccttgtttctcttttggcatccatcaggttagac |
117 |
Q |
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| T |
7062601 |
caaagcagtctgcaccagaaaattccagcaagcttacaaccataaatttagattcattttaagtacccttgtttctcttttggcatccatcagttgagac |
7062700 |
T |
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| Q |
118 |
cttctattgatttatccaact |
138 |
Q |
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| T |
7062701 |
cttctattgatttatccaact |
7062721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 200 - 305
Target Start/End: Original strand, 7062831 - 7062936
Alignment:
| Q |
200 |
acacatcaaataaaattttgtcaacacttctcaagcataattcttttgatgttaccacgctattaggaaatcatttgtaatctaaatatctggctctcga |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
7062831 |
acacatcaaataaaattttgtcaacacttctcaagcataattcttttgatgttaccacgctattaggaaatcatttgtaatctaaatatctggctctcaa |
7062930 |
T |
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| Q |
300 |
ctgtag |
305 |
Q |
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|||||| |
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| T |
7062931 |
ctgtag |
7062936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 7010670 - 7010737
Alignment:
| Q |
53 |
acaaccataaatttagattcattttaagtacccttgtttctcttttggcatccatcaggttagaccttct |
122 |
Q |
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| T |
7010670 |
acaaccatacatttagattc-ttttaagtaccctattat-tcttttggcatccatcaggtgagaccttct |
7010737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 7026028 - 7026095
Alignment:
| Q |
53 |
acaaccataaatttagattcattttaagtacccttgtttctcttttggcatccatcaggttagaccttct |
122 |
Q |
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||||||||| |||||||||| ||||||||||||| | | |||||||||||||||||||| ||||||||| |
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| T |
7026028 |
acaaccatacatttagattc-ttttaagtaccctattat-tcttttggcatccatcaggtgagaccttct |
7026095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 168
Target Start/End: Original strand, 7062799 - 7062830
Alignment:
| Q |
137 |
cttctctttaattgtcttttcaaggttcatgt |
168 |
Q |
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| T |
7062799 |
cttctctttaattgtcttttcaaggttcatgt |
7062830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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