View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8098_high_2 (Length: 327)

Name: NF8098_high_2
Description: NF8098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8098_high_2
NF8098_high_2
[»] chr4 (9 HSPs)
chr4 (1-191)||(49701751-49701941)
chr4 (24-176)||(49485256-49485411)
chr4 (241-308)||(49701634-49701701)
chr4 (1-178)||(49531957-49532134)
chr4 (251-308)||(49531819-49531876)
chr4 (242-308)||(49485152-49485218)
chr4 (1-155)||(49520984-49521138)
chr4 (242-291)||(49520864-49520912)
chr4 (122-155)||(50240085-50240118)
[»] chr3 (2 HSPs)
chr3 (114-159)||(54150739-54150784)
chr3 (2-47)||(54150627-54150672)


Alignment Details
Target: chr4 (Bit Score: 183; Significance: 6e-99; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 49701941 - 49701751
Alignment:
Q  1 cttttgttgagagaactacttgaaagatggtcaaatcacaaaattatgaccaagctcctctcaagaatttttcgttatcttcataaataccatgtccgta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  49701941 cttttgttgagagaactacttgaaagatggtcaaatcacaaaattatgaccaagctcctctcaagaatttttcgttatcttcataaataccatatccgta 49701842  T
Q  101 aaaggggactttcttctcttgaagaaactggcttcttatccttctattacttggttggtgctgagattcctttgaaatactgcactgctga 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  49701841 aaaggggactttcttctcttgaagaaactggcttcttatccttctattacttggttggtgctgagattcctttgaaatattgcactgctga 49701751  T

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Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 24 - 176
Target Start/End: Complemental strand, 49485411 - 49485256
Alignment:
Q  24 aagatggtcaaatcacaaaattatgaccaagctcctctcaagaatttttcgttatcttcataaataccatgtcc---gtaaaaggggactttcttctctt 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| || |||| |||   | ||| |||||||| ||||||||    
T  49485411 aagatggtcaaatcacaaaattatgaccaagctcctctcaagaattttttgttatcttgatagattccatatcccaagaaaatggggacttccttctctt 49485312  T
Q  121 gaagaaactggcttcttatccttctattacttggttggtgctgagattcctttgaa 176  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  49485311 gaagaaactggcttcttatccttctatcacttggttggtgatgagattcctttgaa 49485256  T

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Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 241 - 308
Target Start/End: Complemental strand, 49701701 - 49701634
Alignment:
Q  241 gactctgggattacttcactttatttatctcaggtatatgatgagatgcatagacaagtaatggatgc 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49701701 gactctgggattacttcactttatttatctcaggtatatgatgagatgcatagacaagtaatggatgc 49701634  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 49532134 - 49531957
Alignment:
Q  1 cttttgttgagagaactacttgaaagatggtcaaatcacaaaattatgaccaagctcctctcaagaatttttcgttatcttcataaataccatgtccgta 100  Q
    ||||||||||||||||| || | ||||||||||| |||||||| ||||||||||   ||||| |   |||||| ||||||| ||| ||||  | |  | |    
T  49532134 cttttgttgagagaactgctcggaagatggtcaattcacaaaactatgaccaagtgtctctctaagttttttcattatcttgatagatactttataggaa 49532035  T
Q  101 aaaggggactttcttctcttgaagaaactggcttcttatccttctattacttggttggtgctgagattcctttgaaat 178  Q
     |  | ||||| ||||||||||||||| |||||| || ||||||||| |||||||||||| ||||||| |||| ||||    
T  49532034 gacagcgacttccttctcttgaagaaattggcttgttgtccttctatgacttggttggtgatgagatttctttcaaat 49531957  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 308
Target Start/End: Complemental strand, 49531876 - 49531819
Alignment:
Q  251 ttacttcactttatttatctcaggtatatgatgagatgcatagacaagtaatggatgc 308  Q
    |||||||  |||||||| |||||||||||| ||||||||||||| |||| ||||||||    
T  49531876 ttacttcgatttatttaactcaggtatatgttgagatgcatagagaagtgatggatgc 49531819  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 308
Target Start/End: Complemental strand, 49485218 - 49485152
Alignment:
Q  242 actctgggattacttcactttatttatctcaggtatatgatgagatgcatagacaagtaatggatgc 308  Q
    |||||||| ||||||||  ||||||||| ||||||||||||||  || | | |||||||||||||||    
T  49485218 actctggggttacttcatattatttatcacaggtatatgatgaagtgaagaaacaagtaatggatgc 49485152  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 49521138 - 49520984
Alignment:
Q  1 cttttgttgagagaactacttgaaagatggtcaaatcacaaaattatgaccaagctcctctcaagaatttttcgttatcttcataaataccatgtccgta 100  Q
    |||||||||||||||||  |  |||||||||||||||| |||| |||||||| |   ||||||||   ||||| ||||||| ||| ||||    ||   |    
T  49521138 cttttgttgagagaactggtccaaagatggtcaaatcagaaaactatgaccaggtgtctctcaaggtgttttcattatcttgatagatacttcatcaaaa 49521039  T
Q  101 aaaggggactttcttctcttgaagaaactggcttcttatccttctattacttggt 155  Q
     ||| || |||  |||||||||||||||||  ||||||||||||||| |||||||    
T  49521038 gaagagggcttaattctcttgaagaaactgctttcttatccttctataacttggt 49520984  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 291
Target Start/End: Complemental strand, 49520912 - 49520864
Alignment:
Q  242 actctgggattacttcactttatttatctcaggtatatgatgagatgcat 291  Q
    |||||||| |||||||| |||||| |||||||||||||| ||||||||||    
T  49520912 actctgggtttacttcattttatt-atctcaggtatatgttgagatgcat 49520864  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 155
Target Start/End: Complemental strand, 50240118 - 50240085
Alignment:
Q  122 aagaaactggcttcttatccttctattacttggt 155  Q
    |||||| |||||||||||||||||||||||||||    
T  50240118 aagaaattggcttcttatccttctattacttggt 50240085  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 159
Target Start/End: Original strand, 54150739 - 54150784
Alignment:
Q  114 ttctcttgaagaaactggcttcttatccttctattacttggttggt 159  Q
    |||||||||||||| ||||||||||||||| ||| |||||||||||    
T  54150739 ttctcttgaagaaattggcttcttatccttttatgacttggttggt 54150784  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 54150627 - 54150672
Alignment:
Q  2 ttttgttgagagaactacttgaaagatggtcaaatcacaaaattat 47  Q
    |||||||||||||||||||  ||| |||||||||| ||||||||||    
T  54150627 ttttgttgagagaactactcaaaacatggtcaaattacaaaattat 54150672  T

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