View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8098_low_1 (Length: 424)
Name: NF8098_low_1
Description: NF8098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8098_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 102 - 406
Target Start/End: Complemental strand, 35244407 - 35244098
Alignment:
| Q |
102 |
ataaagttaatccattaattgatcaaacatttttgttgttgatgtaggttatcatgtgtccaaatgtgtgagagaga----taccttaaacatgattatg |
197 |
Q |
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| T |
35244407 |
ataaagttaatccattaattgatcaaacatttttgttgttgatgtaggttatcatgtgtccaaatgtgtgagagagagagataccttaaacatgattatg |
35244308 |
T |
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| Q |
198 |
ctggcaaagatggtaagtgatgtaaacatgacgtagtaaactggtgatacaaccgctgtgttaaaggtgtccaaggcctgaaacatgttttaaaagttaa |
297 |
Q |
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| T |
35244307 |
ctggcaaagatggtaagtgatgtaaacatgacgtagtaaactggtgatacaaccgctgtgttaaaggtgtccaaggcctgaaacatgttttaaaagttaa |
35244208 |
T |
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| Q |
298 |
taaatatcgctacaatannnnnnnagcttaat-aattgtttaggtcctcctattttcaacggtgtaacattactcaaatgttacgatgattatgtatgtg |
396 |
Q |
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| T |
35244207 |
taaatatcgctacaatatttttttagcttaataaattgtttcgttcctcctattttcaacggtgtaacattactcaaatgttacgatgattatgtatgtg |
35244108 |
T |
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| Q |
397 |
tgtgtgtttt |
406 |
Q |
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| T |
35244107 |
tgtgtgtttt |
35244098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 100
Target Start/End: Complemental strand, 35244480 - 35244427
Alignment:
| Q |
42 |
ataacttaaatctaattggcttctctgagcacttgatttgatttattatgtatcataat |
100 |
Q |
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| T |
35244480 |
ataacttaaatataattggcatctctgagcacttg-----atttattatgtatcataat |
35244427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 179 - 246
Target Start/End: Original strand, 37890523 - 37890590
Alignment:
| Q |
179 |
taccttaaacatgattatgctggcaaagatggtaagtgatgtaaacatgacgtagtaaactggtgata |
246 |
Q |
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| T |
37890523 |
taccttaaacatgattatgctggcaatgatggtaaatgaggtaaacatgacatagtaaactggtgata |
37890590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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