View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8098_low_3 (Length: 386)
Name: NF8098_low_3
Description: NF8098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8098_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 15 - 294
Target Start/End: Original strand, 49235479 - 49235758
Alignment:
| Q |
15 |
attattctgtctcagcttggatcattagcattcctcttgctagtagtgcttcttcctatcttgaggtctcgtcgaagatcttagtcaataattaaatcat |
114 |
Q |
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| T |
49235479 |
attattctgtctcagcttggatcattagtattcctcttgctagtagtgcttcttcctatcttgaggtctcgtcgaagatcttagtcaataattaaatcat |
49235578 |
T |
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| Q |
115 |
aatattatttttgcgtgaagatattaattaatttgtattgtaatacgtacgagtgtgataaatttgccacgattgaacctcacctcaacacatattgtgc |
214 |
Q |
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| T |
49235579 |
aatgttatttttgcgtgaagatattaattaatttgtattgtaatacgtacgagtgtgaccaatttgccacgattgaacctcacctcaacacatattgtgc |
49235678 |
T |
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| Q |
215 |
atgatacttgtgtagattatgtttgttaaaaataagcaagtataagctattggaccgattagacatcctataatatatat |
294 |
Q |
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| T |
49235679 |
atgatacttgtgtagattatgtttggtaaaaataagcaagtataagctattggaccgattagacatcctataatatatat |
49235758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 292 - 372
Target Start/End: Original strand, 49236039 - 49236126
Alignment:
| Q |
292 |
tatgaacatgtgaaaactactta-------tgaagatgtcactagttaatgattttctagatatgcgattgtttcggtttttaattta |
372 |
Q |
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| T |
49236039 |
tatgaacatgtgaaaactacttactttacatgaagatgtcactagttaatgattttcaagatatgcgattgtctcggtttttaattta |
49236126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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