View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8098_low_4 (Length: 327)
Name: NF8098_low_4
Description: NF8098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8098_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 6e-99; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 49701941 - 49701751
Alignment:
| Q |
1 |
cttttgttgagagaactacttgaaagatggtcaaatcacaaaattatgaccaagctcctctcaagaatttttcgttatcttcataaataccatgtccgta |
100 |
Q |
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| T |
49701941 |
cttttgttgagagaactacttgaaagatggtcaaatcacaaaattatgaccaagctcctctcaagaatttttcgttatcttcataaataccatatccgta |
49701842 |
T |
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| Q |
101 |
aaaggggactttcttctcttgaagaaactggcttcttatccttctattacttggttggtgctgagattcctttgaaatactgcactgctga |
191 |
Q |
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| T |
49701841 |
aaaggggactttcttctcttgaagaaactggcttcttatccttctattacttggttggtgctgagattcctttgaaatattgcactgctga |
49701751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 24 - 176
Target Start/End: Complemental strand, 49485411 - 49485256
Alignment:
| Q |
24 |
aagatggtcaaatcacaaaattatgaccaagctcctctcaagaatttttcgttatcttcataaataccatgtcc---gtaaaaggggactttcttctctt |
120 |
Q |
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| T |
49485411 |
aagatggtcaaatcacaaaattatgaccaagctcctctcaagaattttttgttatcttgatagattccatatcccaagaaaatggggacttccttctctt |
49485312 |
T |
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| Q |
121 |
gaagaaactggcttcttatccttctattacttggttggtgctgagattcctttgaa |
176 |
Q |
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| T |
49485311 |
gaagaaactggcttcttatccttctatcacttggttggtgatgagattcctttgaa |
49485256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 241 - 308
Target Start/End: Complemental strand, 49701701 - 49701634
Alignment:
| Q |
241 |
gactctgggattacttcactttatttatctcaggtatatgatgagatgcatagacaagtaatggatgc |
308 |
Q |
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| T |
49701701 |
gactctgggattacttcactttatttatctcaggtatatgatgagatgcatagacaagtaatggatgc |
49701634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 49532134 - 49531957
Alignment:
| Q |
1 |
cttttgttgagagaactacttgaaagatggtcaaatcacaaaattatgaccaagctcctctcaagaatttttcgttatcttcataaataccatgtccgta |
100 |
Q |
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||||||||||||||||| || | ||||||||||| |||||||| |||||||||| ||||| | |||||| ||||||| ||| |||| | | | | |
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| T |
49532134 |
cttttgttgagagaactgctcggaagatggtcaattcacaaaactatgaccaagtgtctctctaagttttttcattatcttgatagatactttataggaa |
49532035 |
T |
|
| Q |
101 |
aaaggggactttcttctcttgaagaaactggcttcttatccttctattacttggttggtgctgagattcctttgaaat |
178 |
Q |
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| T |
49532034 |
gacagcgacttccttctcttgaagaaattggcttgttgtccttctatgacttggttggtgatgagatttctttcaaat |
49531957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 308
Target Start/End: Complemental strand, 49531876 - 49531819
Alignment:
| Q |
251 |
ttacttcactttatttatctcaggtatatgatgagatgcatagacaagtaatggatgc |
308 |
Q |
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| T |
49531876 |
ttacttcgatttatttaactcaggtatatgttgagatgcatagagaagtgatggatgc |
49531819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 308
Target Start/End: Complemental strand, 49485218 - 49485152
Alignment:
| Q |
242 |
actctgggattacttcactttatttatctcaggtatatgatgagatgcatagacaagtaatggatgc |
308 |
Q |
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| T |
49485218 |
actctggggttacttcatattatttatcacaggtatatgatgaagtgaagaaacaagtaatggatgc |
49485152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 49521138 - 49520984
Alignment:
| Q |
1 |
cttttgttgagagaactacttgaaagatggtcaaatcacaaaattatgaccaagctcctctcaagaatttttcgttatcttcataaataccatgtccgta |
100 |
Q |
| |
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||||||||||||||||| | |||||||||||||||| |||| |||||||| | |||||||| ||||| ||||||| ||| |||| || | |
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| T |
49521138 |
cttttgttgagagaactggtccaaagatggtcaaatcagaaaactatgaccaggtgtctctcaaggtgttttcattatcttgatagatacttcatcaaaa |
49521039 |
T |
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| Q |
101 |
aaaggggactttcttctcttgaagaaactggcttcttatccttctattacttggt |
155 |
Q |
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||| || ||| ||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
49521038 |
gaagagggcttaattctcttgaagaaactgctttcttatccttctataacttggt |
49520984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 291
Target Start/End: Complemental strand, 49520912 - 49520864
Alignment:
| Q |
242 |
actctgggattacttcactttatttatctcaggtatatgatgagatgcat |
291 |
Q |
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| T |
49520912 |
actctgggtttacttcattttatt-atctcaggtatatgttgagatgcat |
49520864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 155
Target Start/End: Complemental strand, 50240118 - 50240085
Alignment:
| Q |
122 |
aagaaactggcttcttatccttctattacttggt |
155 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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| T |
50240118 |
aagaaattggcttcttatccttctattacttggt |
50240085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 159
Target Start/End: Original strand, 54150739 - 54150784
Alignment:
| Q |
114 |
ttctcttgaagaaactggcttcttatccttctattacttggttggt |
159 |
Q |
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| T |
54150739 |
ttctcttgaagaaattggcttcttatccttttatgacttggttggt |
54150784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 54150627 - 54150672
Alignment:
| Q |
2 |
ttttgttgagagaactacttgaaagatggtcaaatcacaaaattat |
47 |
Q |
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| T |
54150627 |
ttttgttgagagaactactcaaaacatggtcaaattacaaaattat |
54150672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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