View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8098_low_5 (Length: 228)
Name: NF8098_low_5
Description: NF8098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8098_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 217
Target Start/End: Original strand, 37253760 - 37253961
Alignment:
| Q |
16 |
ctaacagcacccaccaacctatacagcacaggtcatacctcagcacatcgtacatcaatctattgcgagctcggtggatcaaggacacatcaggttgttc |
115 |
Q |
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| T |
37253760 |
ctaacagcacccaccaacctatacagcacaggtcatacctcagcacatcgtacatcaatctattgcgagctcggtggatcaaggacacatcaggttgttc |
37253859 |
T |
|
| Q |
116 |
ttcatgggataattttcttccatatttttgccatggctctgcaacaataattcaatttctgcaagcgcataacttggcaactgatggtgatccaacacca |
215 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
37253860 |
ttcatgggataatcttcttccatatttttgccatggctctgcaacaataattcaatttctgccggcgcataactttgcaactgatggtgatccaacacca |
37253959 |
T |
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| Q |
216 |
aa |
217 |
Q |
| |
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|| |
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| T |
37253960 |
aa |
37253961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 16 - 217
Target Start/End: Original strand, 11073282 - 11073483
Alignment:
| Q |
16 |
ctaacagcacccaccaacctatacagcacaggtcatacctcagcacatcgtacatcaatctattgcgagctcggtggatcaaggacacatcaggttgttc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11073282 |
ctaacagcacccaccaacctatacagcacaggtcatacctcagcacatcgtacatcaatctattgcgagctcggtggatcaaggacacatcaggttgttc |
11073381 |
T |
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| Q |
116 |
ttcatgggataattttcttccatatttttgccatggctctgcaacaataattcaatttctgcaagcgcataacttggcaactgatggtgatccaacacca |
215 |
Q |
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||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||| |||||| ||||||||||||||||| |
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| T |
11073382 |
ttcatgggataatcttcttccatatttttaccatggctctgcaacaataattcaatttcttccagcgcataactttgcaactaatggtgatccaacacca |
11073481 |
T |
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| Q |
216 |
aa |
217 |
Q |
| |
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|| |
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| T |
11073482 |
aa |
11073483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 45091410 - 45091210
Alignment:
| Q |
16 |
ctaacagcacccaccaacctatacagcacaggtcatacctcagcacatcgtacatcaatctattgcgagctcggtggatcaaggacacatcaggttgttc |
115 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||| |
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| T |
45091410 |
ctaacagcatccaccaacctatacagcacaggtcatacctcagcacatcgtacatcaatctattgcgagcttggtggatcaagga-acatcatgttgttc |
45091312 |
T |
|
| Q |
116 |
ttcatgggataattttcttccatatttttgccatggctctgcaacaataattcaatttctgcaagcgcataacttggcaactgatggtgatccaacacca |
215 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||| |
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| T |
45091311 |
ttcatgagataattttcttccatatttttgccatggctctgcaacaataattcaatttccgccagcgcataactttgcaactgatggtgatccaacacca |
45091212 |
T |
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| Q |
216 |
aa |
217 |
Q |
| |
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|| |
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|
| T |
45091211 |
aa |
45091210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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