View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8099_high_10 (Length: 251)
Name: NF8099_high_10
Description: NF8099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8099_high_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 69 - 237
Target Start/End: Original strand, 5895313 - 5895482
Alignment:
| Q |
69 |
ttgataaagggtggcgaatttgaaatatttg-cgagaatatatcctctcaaatgtatccttatcaaacaattccatggatttcacagcctcaccatccat |
167 |
Q |
| |
|
||||||| |||||| ||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5895313 |
ttgataaggggtggggaatttgaaatttttttcgagaatatatcctctcaaatctatccttatcaaacaattccctggatttcacagcctcaccatccat |
5895412 |
T |
|
| Q |
168 |
tccacccttttcaaacttccttgcgttaacagcagcgtgactaatcgaaacgtgatttaaatcgaggtct |
237 |
Q |
| |
|
||||| |||||||||||||||| |||| |||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5895413 |
tccacacttttcaaacttccttccgttgacagcatcgtgactaatcgaaacgtgatttgaatcgaggtct |
5895482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 5880924 - 5880996
Alignment:
| Q |
110 |
tcctctcaaatgtatccttatcaaacaattccatggatttcacagcctcaccatccattccacccttttcaaa |
182 |
Q |
| |
|
||||||||| |||||||||||||||||| ||| | | |||||||| ||||||| |||||||||||||||||| |
|
|
| T |
5880924 |
tcctctcaactgtatccttatcaaacaactccttcaacttcacagcatcaccattcattccacccttttcaaa |
5880996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 5895204 - 5895269
Alignment:
| Q |
1 |
ccacctgaaaaatattagagctttattcggcgcatattctaaattttgcaaggccaactcaacaaat |
67 |
Q |
| |
|
||||||||||||||||| ||||||| | ||| ||| |||||||||||| |||||||||||||||||| |
|
|
| T |
5895204 |
ccacctgaaaaatattaaagctttactaggcacat-ttctaaattttgtaaggccaactcaacaaat |
5895269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University