View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8099_low_1 (Length: 688)

Name: NF8099_low_1
Description: NF8099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8099_low_1
NF8099_low_1
[»] chr5 (10 HSPs)
chr5 (15-644)||(37077626-37078255)
chr5 (400-523)||(973098-973221)
chr5 (559-607)||(7113630-7113678)
chr5 (564-633)||(972813-972883)
chr5 (434-507)||(2243315-2243388)
chr5 (644-675)||(37077556-37077587)
chr5 (566-604)||(2243339-2243377)
chr5 (566-604)||(41264387-41264425)
chr5 (563-604)||(973125-973166)
chr5 (461-510)||(7215322-7215371)
[»] chr1 (16 HSPs)
chr1 (563-622)||(52432656-52432716)
chr1 (563-608)||(46080981-46081026)
chr1 (461-509)||(5500843-5500891)
chr1 (563-633)||(2534436-2534507)
chr1 (575-629)||(3367746-3367801)
chr1 (475-510)||(11426631-11426666)
chr1 (565-608)||(42819631-42819674)
chr1 (582-632)||(45136757-45136808)
chr1 (558-608)||(10775173-10775223)
chr1 (461-507)||(52432836-52432882)
chr1 (461-518)||(10775155-10775212)
chr1 (564-632)||(34601630-34601699)
chr1 (461-510)||(45967852-45967901)
chr1 (461-510)||(46080971-46081020)
chr1 (564-622)||(38839682-38839739)
chr1 (471-515)||(42819616-42819660)
[»] chr2 (8 HSPs)
chr2 (564-630)||(2248957-2249024)
chr2 (461-507)||(16863459-16863505)
chr2 (563-632)||(38576957-38577027)
chr2 (564-620)||(16863453-16863510)
chr2 (563-629)||(16576236-16576303)
chr2 (434-510)||(16576248-16576324)
chr2 (564-630)||(34176630-34176697)
chr2 (408-510)||(38576750-38576843)
[»] chr6 (9 HSPs)
chr6 (568-631)||(20067902-20067966)
chr6 (467-518)||(32342592-32342643)
chr6 (559-598)||(32047194-32047233)
chr6 (559-608)||(32342610-32342659)
chr6 (459-507)||(20206479-20206527)
chr6 (459-507)||(22100502-22100550)
chr6 (569-618)||(20206481-20206531)
chr6 (569-618)||(22100504-22100554)
chr6 (559-604)||(7556132-7556177)
[»] chr4 (5 HSPs)
chr4 (397-510)||(15131537-15131650)
chr4 (461-523)||(20512694-20512756)
chr4 (459-509)||(25234224-25234274)
chr4 (564-634)||(20512848-20512919)
chr4 (563-607)||(15131595-15131639)
[»] chr3 (5 HSPs)
chr3 (566-636)||(7641829-7641900)
chr3 (461-510)||(54437806-54437855)
chr3 (564-597)||(45228345-45228378)
chr3 (566-598)||(54437657-54437689)
chr3 (564-608)||(54437816-54437860)
[»] chr8 (5 HSPs)
chr8 (563-607)||(32166655-32166699)
chr8 (397-489)||(33897758-33897850)
chr8 (563-629)||(6630559-6630626)
chr8 (564-617)||(31475039-31475092)
chr8 (461-510)||(32166661-32166710)
[»] chr7 (4 HSPs)
chr7 (397-510)||(34891533-34891646)
chr7 (461-510)||(29152353-29152402)
chr7 (563-604)||(34891547-34891588)
chr7 (564-608)||(7463858-7463902)
[»] scaffold1743 (1 HSPs)
scaffold1743 (563-631)||(770-838)


Alignment Details
Target: chr5 (Bit Score: 561; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 15 - 644
Target Start/End: Complemental strand, 37078255 - 37077626
Alignment:
Q  15 gattatacattaaagtaagggttaaacaaagagaaagcataaaaatgaaatacagaaagagaaaatcatctttattaccatttttgtaagcggagaacgt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37078255 gattatacattaaagtaagggttaaacaaagagaaagcataaaaatgaaatacagaaagagaaaatcatctttattaccatttttgtaagcggagaacgt 37078156  T
Q  115 aaaggaaaattcgtcaacgtcgttagttatcgaattcacaagaatataagtatgtaaccatttgcattagaggagagagactgaataaaagatggagggn 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  37078155 aaaggaaaattcgtcaacgtcgttagttatcgaattcacaagaatataagtatgtaaccatttgcattagaggagagagactgaataaaagatggaggga 37078056  T
Q  215 nnnnnnnnnnnnnnngtgtaaccatttgcgtctgttttgtcactaactcaatccacggttaaaataaacgtggtaatttcatcgtgtggttaaaactggt 314  Q
                   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37078055 aaaaaggaaaaaaaagtgtaaccatttgcgtctgttttgtcactaactcaatccacggttaaaataaacgtggtaatttcatcgtgtggttaaaactggt 37077956  T
Q  315 ttattgggattcaaaatgcacgcacccataattacatgtctaagttgctacttccaaaattgagagtaattttctcctaatgataataaataagattcaa 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37077955 ttattgggattcaaaatgcacgcacccataattacatgtctaagttgctacttccaaaattgagagtaattttctcctaatgataataaataagattcaa 37077856  T
Q  415 ttttgaaatgaatgatatagagatcacatgttgaatgnnnnnnnttaagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaaagcta 514  Q
    |||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37077855 ttttgaaatgaatgatatagagatcacatgttgaatgaaaaaaattaagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaaagcta 37077756  T
Q  515 aaatacatttaccccaaataataaatatgattcaattataaatcgaatgagatgaagaagtttaatgttcttgagatgaaaatgataactgatttaagaa 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37077755 aaatacatttaccccaaataataaatatgattcaattataaatcgaatgagatgaagaagtttaatgttcttgagatgaaaatgataactgatttaagaa 37077656  T
Q  615 taaagatggagaaaatgaaaatctctttaa 644  Q
    ||||||||||||||||||||||||||||||    
T  37077655 taaagatggagaaaatgaaaatctctttaa 37077626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 400 - 523
Target Start/End: Complemental strand, 973221 - 973098
Alignment:
Q  400 ataaataagattcaattttgaaatgaatgatatagagatcacatgttgaatgnnnnnnnttaagaaatttgatgtttttgagatgaaaatgctaactgat 499  Q
    ||||||| |||||||||||| ||||||||| ||  ||||||||||||||||        | ||||||||| ||||||||||||| |||||| ||||| ||    
T  973221 ataaatatgattcaattttgtaatgaatgagatgaagatcacatgttgaataaaggagatgaagaaatttaatgtttttgagataaaaatgataactaat 973122  T
Q  500 tgtaagaaaaagctaaaatacatt 523  Q
    ||||||||||| | || |||||||    
T  973121 tgtaagaaaaaaccaacatacatt 973098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 559 - 607
Target Start/End: Original strand, 7113630 - 7113678
Alignment:
Q  559 gaatgagatgaagaagtttaatgttcttgagatgaaaatgataactgat 607  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  7113630 gaatgagatgaagaagtttaatattcttgagatgaaaatgataattgat 7113678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 564 - 633
Target Start/End: Complemental strand, 972883 - 972813
Alignment:
Q  564 agatgaagaagtttaatgttcttgagatgaaaatgataactga-tttaagaataaagatggagaaaatgaa 633  Q
    |||||||||||||| |||||||||||||||||||||||||| | ||||| |||||||| | | ||||||||    
T  972883 agatgaagaagtttgatgttcttgagatgaaaatgataactaattttaaaaataaagaggaaaaaaatgaa 972813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 434 - 507
Target Start/End: Original strand, 2243315 - 2243388
Alignment:
Q  434 gagatcacatgttgaatgnnnnnnnttaagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaa 507  Q
    ||||||||||||||||||       | ||||| ||||||||| |||||||||||||| ||||| ||||||||||    
T  2243315 gagatcacatgttgaatgaaggatatgaagaagtttgatgttcttgagatgaaaatggtaactaattgtaagaa 2243388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 644 - 675
Target Start/End: Complemental strand, 37077587 - 37077556
Alignment:
Q  644 agaaaaaaccttcaagaacactaagaataata 675  Q
    ||||||||||||||||||||||||||||||||    
T  37077587 agaaaaaaccttcaagaacactaagaataata 37077556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 566 - 604
Target Start/End: Original strand, 2243339 - 2243377
Alignment:
Q  566 atgaagaagtttaatgttcttgagatgaaaatgataact 604  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  2243339 atgaagaagtttgatgttcttgagatgaaaatggtaact 2243377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 566 - 604
Target Start/End: Complemental strand, 41264425 - 41264387
Alignment:
Q  566 atgaagaagtttaatgttcttgagatgaaaatgataact 604  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  41264425 atgaaaaagtttaatgttcttgagatgaaaatgacaact 41264387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 563 - 604
Target Start/End: Complemental strand, 973166 - 973125
Alignment:
Q  563 gagatgaagaagtttaatgttcttgagatgaaaatgataact 604  Q
    ||||||||||| ||||||||| ||||||| ||||||||||||    
T  973166 gagatgaagaaatttaatgtttttgagataaaaatgataact 973125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 510
Target Start/End: Original strand, 7215322 - 7215371
Alignment:
Q  461 aagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaaa 510  Q
    ||||| ||||||||| |||||||||||||| ||  |||||||||||||||    
T  7215322 aagaagtttgatgttcttgagatgaaaatggtagttgattgtaagaaaaa 7215371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 563 - 622
Target Start/End: Complemental strand, 52432716 - 52432656
Alignment:
Q  563 gagatgaagaagtttaatgttcttgagatgaaaatgataactgatt-taagaataaagatg 622  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||    
T  52432716 gagatgaagaagtttaatgttcttgagatgaaaatggtaattgattataagaataaagatg 52432656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 563 - 608
Target Start/End: Complemental strand, 46081026 - 46080981
Alignment:
Q  563 gagatgaagaagtttaatgttcttgagatgaaaatgataactgatt 608  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||    
T  46081026 gagatgaagaagtttaatgttcttgagatgaaaatggtaattgatt 46080981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 461 - 509
Target Start/End: Original strand, 5500843 - 5500891
Alignment:
Q  461 aagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaa 509  Q
    ||||||||||||||||||||||| |||||| ||||||||| || |||||    
T  5500843 aagaaatttgatgtttttgagataaaaatggtaactgattatacgaaaa 5500891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 563 - 633
Target Start/End: Original strand, 2534436 - 2534507
Alignment:
Q  563 gagatgaagaagtttaatgttcttgagatgaaaatgataactga-tttaagaataaagatggagaaaatgaa 633  Q
    ||||||||||||||| ||||| ||||||||||| || ||| | | ||||| |||||||||| ||||||||||    
T  2534436 gagatgaagaagtttgatgtttttgagatgaaagtggtaaattattttaaaaataaagatgaagaaaatgaa 2534507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 575 - 629
Target Start/End: Complemental strand, 3367801 - 3367746
Alignment:
Q  575 tttaatgttcttgagatgaaaatgataactgat-ttaagaataaagatggagaaaa 629  Q
    |||||| ||||||||||||||| ||||||||||  |||||||||||||| ||||||    
T  3367801 tttaatattcttgagatgaaaacgataactgatcgtaagaataaagatgaagaaaa 3367746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 475 - 510
Target Start/End: Original strand, 11426631 - 11426666
Alignment:
Q  475 ttttgagatgaaaatgctaactgattgtaagaaaaa 510  Q
    |||||||||||||||| |||||||||||||||||||    
T  11426631 ttttgagatgaaaatggtaactgattgtaagaaaaa 11426666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 565 - 608
Target Start/End: Complemental strand, 42819674 - 42819631
Alignment:
Q  565 gatgaagaagtttaatgttcttgagatgaaaatgataactgatt 608  Q
    |||||| |||||| |||||||||||||||||||||||| |||||    
T  42819674 gatgaataagttttatgttcttgagatgaaaatgataattgatt 42819631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 582 - 632
Target Start/End: Original strand, 45136757 - 45136808
Alignment:
Q  582 ttcttgagatgaaaatgataactgatt-taagaataaagatggagaaaatga 632  Q
    |||||| ||||||||| |||||||||| |||||||||||||| |||||||||    
T  45136757 ttcttgcgatgaaaataataactgattgtaagaataaagatgaagaaaatga 45136808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 558 - 608
Target Start/End: Complemental strand, 10775223 - 10775173
Alignment:
Q  558 cgaatgagatgaagaagtttaatgttcttgagatgaaaatgataactgatt 608  Q
    |||| ||||||||||||||| |||||||| ||||||||||| ||| |||||    
T  10775223 cgaaagagatgaagaagtttgatgttcttaagatgaaaatggtaattgatt 10775173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 461 - 507
Target Start/End: Complemental strand, 52432882 - 52432836
Alignment:
Q  461 aagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaa 507  Q
    ||||| |||||||||||||||| ||||||| ||||| ||||||||||    
T  52432882 aagaagtttgatgtttttgagaagaaaatgataactaattgtaagaa 52432836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 518
Target Start/End: Complemental strand, 10775212 - 10775155
Alignment:
Q  461 aagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaaagctaaaat 518  Q
    ||||| ||||||||| || ||||||||||| ||| ||||| ||||||||| |||||||    
T  10775212 aagaagtttgatgttcttaagatgaaaatggtaattgattctaagaaaaaactaaaat 10775155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 564 - 632
Target Start/End: Original strand, 34601630 - 34601699
Alignment:
Q  564 agatgaagaagtttaatgttcttgagatgaaaatgataactgat-ttaagaataaagatggagaaaatga 632  Q
    ||||||| | |||| ||||| ||||||||||||| |||||| ||  |||||||||||||| |||||||||    
T  34601630 agatgaaaacgtttgatgtttttgagatgaaaataataactaatcgtaagaataaagatgaagaaaatga 34601699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 510
Target Start/End: Original strand, 45967852 - 45967901
Alignment:
Q  461 aagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaaa 510  Q
    ||||||||| || ||||||| ||||||||| |||| ||||||||||||||    
T  45967852 aagaaatttaatatttttgaaatgaaaatgataacagattgtaagaaaaa 45967901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 510
Target Start/End: Complemental strand, 46081020 - 46080971
Alignment:
Q  461 aagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaaa 510  Q
    ||||| ||| ||||| |||||||||||||| ||| |||||||||||||||    
T  46081020 aagaagtttaatgttcttgagatgaaaatggtaattgattgtaagaaaaa 46080971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 564 - 622
Target Start/End: Original strand, 38839682 - 38839739
Alignment:
Q  564 agatgaagaagtttaatgttcttgagatgaaaatgataactgatt-taagaataaagatg 622  Q
    ||||||||| |||| |||||||||||||||||||  ||||| ||| ||||||||||||||    
T  38839682 agatgaagaggtttgatgttcttgagatgaaaat--taactaattgtaagaataaagatg 38839739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 471 - 515
Target Start/End: Complemental strand, 42819660 - 42819616
Alignment:
Q  471 atgtttttgagatgaaaatgctaactgattgtaagaaaaagctaa 515  Q
    ||||| |||||||||||||| ||| ||||||||||||||| ||||    
T  42819660 atgttcttgagatgaaaatgataattgattgtaagaaaaaactaa 42819616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 564 - 630
Target Start/End: Original strand, 2248957 - 2249024
Alignment:
Q  564 agatgaagaagtttaatgttcttgagatgaaaatgataactgatt-taagaataaagatggagaaaat 630  Q
    |||||||||||||||||||| |||||||||||||| ||||| ||| |||||||||||||| |||||||    
T  2248957 agatgaagaagtttaatgtttttgagatgaaaatggtaactaattctaagaataaagatgaagaaaat 2249024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 461 - 507
Target Start/End: Complemental strand, 16863505 - 16863459
Alignment:
Q  461 aagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaa 507  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||    
T  16863505 aagaaatttgatgttcttgagatgaaaatggtaactgattgtaagaa 16863459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 563 - 632
Target Start/End: Original strand, 38576957 - 38577027
Alignment:
Q  563 gagatgaagaagtttaatgttcttgagatgaaaatgataactgatt-taagaataaagatggagaaaatga 632  Q
    ||||||||||| |||||||||||| ||||||||||| ||||||||| ||| |||||| ||| |||||||||    
T  38576957 gagatgaagaactttaatgttctttagatgaaaatggtaactgattataaaaataaatatgaagaaaatga 38577027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 564 - 620
Target Start/End: Complemental strand, 16863510 - 16863453
Alignment:
Q  564 agatgaagaagtttaatgttcttgagatgaaaatgataactgatt-taagaataaaga 620  Q
    |||||||||| ||| |||||||||||||||||||| ||||||||| ||||||||||||    
T  16863510 agatgaagaaatttgatgttcttgagatgaaaatggtaactgattgtaagaataaaga 16863453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 563 - 629
Target Start/End: Complemental strand, 16576303 - 16576236
Alignment:
Q  563 gagatgaagaagtttaatgttcttgagatgaaaatgataactgatt-taagaataaagatggagaaaa 629  Q
    ||||||||||||||| |||||||||||| ||||||| ||| ||||| |||||| |||| || ||||||    
T  16576303 gagatgaagaagtttgatgttcttgagaggaaaatggtaattgattgtaagaaaaaaggtgaagaaaa 16576236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 434 - 510
Target Start/End: Complemental strand, 16576324 - 16576248
Alignment:
Q  434 gagatcacatgttgaatgnnnnnnnttaagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaaa 510  Q
    ||||||||||||||||||       | ||||| ||||||||| |||||| ||||||| ||| |||||||||||||||    
T  16576324 gagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaattgattgtaagaaaaa 16576248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 564 - 630
Target Start/End: Complemental strand, 34176697 - 34176630
Alignment:
Q  564 agatgaagaagtttaatgttcttgagatgaaaatgataactgatt-taagaataaagatggagaaaat 630  Q
    |||||||||||||| || ||||| ||||||||||| ||||||||| ||  |||||||||| |||||||    
T  34176697 agatgaagaagtttgatattcttaagatgaaaatggtaactgattgtagaaataaagatgaagaaaat 34176630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 408 - 510
Target Start/End: Original strand, 38576750 - 38576843
Alignment:
Q  408 gattcaattttgaaatgaatgatatagagatcacatgttgaatgnnnnnnnttaagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaa 507  Q
    ||||| |||||| |||||| ||||| |||| |||||||||||||         ||||| ||||||  | |||||||||||||| ||||||||||||||||    
T  38576750 gattcgattttggaatgaaggatatggagaacacatgttgaatg---------aagaagtttgattatattgagatgaaaatggtaactgattgtaagaa 38576840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 568 - 631
Target Start/End: Complemental strand, 20067966 - 20067902
Alignment:
Q  568 gaagaagtttaatgttcttgagatgaaaatgataactgatt-taagaataaagatggagaaaatg 631  Q
    |||||||| ||||||| |||||||||||||||||||||||| |||||||||| ||| ||||||||    
T  20067966 gaagaagtataatgttattgagatgaaaatgataactgattctaagaataaaaatgaagaaaatg 20067902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 467 - 518
Target Start/End: Complemental strand, 32342643 - 32342592
Alignment:
Q  467 tttgatgtttttgagatgaaaatgctaactgattgtaagaaaaagctaaaat 518  Q
    |||||||||||||||||||||||| ||| ||||||||||||||| |||||||    
T  32342643 tttgatgtttttgagatgaaaatgataattgattgtaagaaaaaactaaaat 32342592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 559 - 598
Target Start/End: Complemental strand, 32047233 - 32047194
Alignment:
Q  559 gaatgagatgaagaagtttaatgttcttgagatgaaaatg 598  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  32047233 gaatgagatgaagaagtttgatgttcttgagatgaaaatg 32047194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 559 - 608
Target Start/End: Complemental strand, 32342659 - 32342610
Alignment:
Q  559 gaatgagatgaagaagtttaatgttcttgagatgaaaatgataactgatt 608  Q
    |||||||||||| |||||| ||||| |||||||||||||||||| |||||    
T  32342659 gaatgagatgaaaaagtttgatgtttttgagatgaaaatgataattgatt 32342610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 459 - 507
Target Start/End: Original strand, 20206479 - 20206527
Alignment:
Q  459 ttaagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaa 507  Q
    ||||||| ||||||||| |||||||||||||| ||| ||||||||||||    
T  20206479 ttaagaagtttgatgttattgagatgaaaatgataattgattgtaagaa 20206527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 459 - 507
Target Start/End: Original strand, 22100502 - 22100550
Alignment:
Q  459 ttaagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaa 507  Q
    ||||||| ||||||||| |||||||||||||| ||| ||||||||||||    
T  22100502 ttaagaagtttgatgttattgagatgaaaatgataattgattgtaagaa 22100550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 569 - 618
Target Start/End: Original strand, 20206481 - 20206531
Alignment:
Q  569 aagaagtttaatgttcttgagatgaaaatgataactgatt-taagaataaa 618  Q
    ||||||||| ||||| |||||||||||||||||| ||||| ||||||||||    
T  20206481 aagaagtttgatgttattgagatgaaaatgataattgattgtaagaataaa 20206531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 569 - 618
Target Start/End: Original strand, 22100504 - 22100554
Alignment:
Q  569 aagaagtttaatgttcttgagatgaaaatgataactgatt-taagaataaa 618  Q
    ||||||||| ||||| |||||||||||||||||| ||||| ||||||||||    
T  22100504 aagaagtttgatgttattgagatgaaaatgataattgattgtaagaataaa 22100554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 559 - 604
Target Start/End: Original strand, 7556132 - 7556177
Alignment:
Q  559 gaatgagatgaagaagtttaatgttcttgagatgaaaatgataact 604  Q
    |||||| ||||| || ||||||||||||||||||||||||| ||||    
T  7556132 gaatgatatgaataaatttaatgttcttgagatgaaaatgacaact 7556177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 397 - 510
Target Start/End: Original strand, 15131537 - 15131650
Alignment:
Q  397 ataataaataagattcaattttgaaatgaatgatatagagatcacatgttgaatgnnnnnnnttaagaaatttgatgtttttgagatgaaaatgctaact 496  Q
    |||| |||||||||| |||||| ||| |||  | |||||||||||||| ||||||       | ||||||||||||||| ||||||| |||||| |||||    
T  15131537 ataagaaataagatttaatttttaaacgaagtaaatagagatcacatgctgaatgaaggagatgaagaaatttgatgttcttgagataaaaatggtaact 15131636  T
Q  497 gattgtaagaaaaa 510  Q
    ||| ||||||||||    
T  15131637 gatagtaagaaaaa 15131650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 461 - 523
Target Start/End: Original strand, 20512694 - 20512756
Alignment:
Q  461 aagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaaagctaaaatacatt 523  Q
    |||||| || |||||||||||||||||| | ||||| ||||||||||||| | ||||||||||    
T  20512694 aagaaacttaatgtttttgagatgaaaaagataactaattgtaagaaaaaaccaaaatacatt 20512756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 459 - 509
Target Start/End: Original strand, 25234224 - 25234274
Alignment:
Q  459 ttaagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaa 509  Q
    ||||||||||||||||| |||||||||||||| ||||||||  ||||||||    
T  25234224 ttaagaaatttgatgttcttgagatgaaaatggtaactgatgctaagaaaa 25234274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 564 - 634
Target Start/End: Original strand, 20512848 - 20512919
Alignment:
Q  564 agatgaagaagtttaatgttcttgagatgaaaatgataactga-tttaagaataaagatggagaaaatgaaa 634  Q
    |||||||||||||| |||||  | |||||||||||| || ||| ||||| |||||||||| |||||||||||    
T  20512848 agatgaagaagtttgatgtttataagatgaaaatgacaattgattttaaaaataaagatgaagaaaatgaaa 20512919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 563 - 607
Target Start/End: Original strand, 15131595 - 15131639
Alignment:
Q  563 gagatgaagaagtttaatgttcttgagatgaaaatgataactgat 607  Q
    ||||||||||| ||| ||||||||||||| |||||| ||||||||    
T  15131595 gagatgaagaaatttgatgttcttgagataaaaatggtaactgat 15131639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 566 - 636
Target Start/End: Complemental strand, 7641900 - 7641829
Alignment:
Q  566 atgaagaagtttaatgttcttgagatgaaaatgataactga-tttaagaataaagatggagaaaatgaaaat 636  Q
    ||||| |||||| |||||||||| || |||||||||||||| ||||||||||||| || |||||||||||||    
T  7641900 atgaaaaagtttgatgttcttgatataaaaatgataactgattttaagaataaagttgaagaaaatgaaaat 7641829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 461 - 510
Target Start/End: Complemental strand, 54437855 - 54437806
Alignment:
Q  461 aagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaaa 510  Q
    ||||| ||||||||||||||||| |||||| |||||||||||||||||||    
T  54437855 aagaagtttgatgtttttgagattaaaatggtaactgattgtaagaaaaa 54437806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 564 - 597
Target Start/End: Original strand, 45228345 - 45228378
Alignment:
Q  564 agatgaagaagtttaatgttcttgagatgaaaat 597  Q
    ||||||| ||||||||||||||||||||||||||    
T  45228345 agatgaaaaagtttaatgttcttgagatgaaaat 45228378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 566 - 598
Target Start/End: Complemental strand, 54437689 - 54437657
Alignment:
Q  566 atgaagaagtttaatgttcttgagatgaaaatg 598  Q
    |||||||||||||||||| ||||||||||||||    
T  54437689 atgaagaagtttaatgttattgagatgaaaatg 54437657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 564 - 608
Target Start/End: Complemental strand, 54437860 - 54437816
Alignment:
Q  564 agatgaagaagtttaatgttcttgagatgaaaatgataactgatt 608  Q
    |||||||||||||| ||||| ||||||| |||||| |||||||||    
T  54437860 agatgaagaagtttgatgtttttgagattaaaatggtaactgatt 54437816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 563 - 607
Target Start/End: Original strand, 32166655 - 32166699
Alignment:
Q  563 gagatgaagaagtttaatgttcttgagatgaaaatgataactgat 607  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||    
T  32166655 gagatgaagaagtttgatgttcttgagatgaaaatgataattgat 32166699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 397 - 489
Target Start/End: Complemental strand, 33897850 - 33897758
Alignment:
Q  397 ataataaataagattcaattttgaaatgaatgatatagagatcacatgttgaatgnnnnnnnttaagaaatttgatgtttttgagatgaaaat 489  Q
    |||||||||||||||| ||||||||| |||  | || ||| | ||||||||||||       ||||||| |||||||||||||||||||||||    
T  33897850 ataataaataagattcgattttgaaacgaaataaatggaggttacatgttgaatgaaggaaattaagaattttgatgtttttgagatgaaaat 33897758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 563 - 629
Target Start/End: Original strand, 6630559 - 6630626
Alignment:
Q  563 gagatgaagaagtttaatgttcttgagatgaaaatgataactgattt-aagaataaagatggagaaaa 629  Q
    ||||||||||| ||||||| |||| ||||||||||| ||| |||||| ||||||||||| | ||||||    
T  6630559 gagatgaagaaatttaatgatcttaagatgaaaatggtaattgatttgaagaataaagacgaagaaaa 6630626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 564 - 617
Target Start/End: Complemental strand, 31475092 - 31475039
Alignment:
Q  564 agatgaagaagtttaatgttcttgagatgaaaatgataactgatttaagaataa 617  Q
    |||||||||||||| ||||||||||||| |||||  ||||||||| || |||||    
T  31475092 agatgaagaagtttgatgttcttgagataaaaatagtaactgattcaaaaataa 31475039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 510
Target Start/End: Original strand, 32166661 - 32166710
Alignment:
Q  461 aagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaaa 510  Q
    ||||| ||||||||| |||||||||||||| ||| |||| ||||||||||    
T  32166661 aagaagtttgatgttcttgagatgaaaatgataattgatagtaagaaaaa 32166710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 397 - 510
Target Start/End: Complemental strand, 34891646 - 34891533
Alignment:
Q  397 ataataaataagattcaattttgaaatgaatgatatagagatcacatgttgaatgnnnnnnnttaagaaatttgatgtttttgagatgaaaatgctaact 496  Q
    |||| |||||||||||||||||  || |||  | || ||||||||||||||||||       | ||||||||||||||| ||||||| |||||| |||||    
T  34891646 ataacaaataagattcaattttataacgaagcaaatggagatcacatgttgaatgaaggagatgaagaaatttgatgttcttgagatcaaaatgataact 34891547  T
Q  497 gattgtaagaaaaa 510  Q
     || ||||||||||    
T  34891546 aatagtaagaaaaa 34891533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 461 - 510
Target Start/End: Original strand, 29152353 - 29152402
Alignment:
Q  461 aagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaaa 510  Q
    ||||| ||||||||| |||||||||||||  |||||||||||||||||||    
T  29152353 aagaagtttgatgttattgagatgaaaatagtaactgattgtaagaaaaa 29152402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 563 - 604
Target Start/End: Complemental strand, 34891588 - 34891547
Alignment:
Q  563 gagatgaagaagtttaatgttcttgagatgaaaatgataact 604  Q
    ||||||||||| ||| ||||||||||||| ||||||||||||    
T  34891588 gagatgaagaaatttgatgttcttgagatcaaaatgataact 34891547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 564 - 608
Target Start/End: Complemental strand, 7463902 - 7463858
Alignment:
Q  564 agatgaagaagtttaatgttcttgagatgaaaatgataactgatt 608  Q
    |||||||||||||| |||||||| | |||||||||||||| ||||    
T  7463902 agatgaagaagtttgatgttcttcaaatgaaaatgataaccgatt 7463858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1743 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 563 - 631
Target Start/End: Complemental strand, 838 - 770
Alignment:
Q  563 gagatgaagaagtttaatgttcttgagatgaaaatgataactgatttaagaataaagatggagaaaatg 631  Q
    ||||||||||||||| || | ||||| | ||||||||||| |||| ||| |||||| ||| ||||||||    
T  838 gagatgaagaagtttgatatacttgaaaggaaaatgataaatgatgtaaaaataaaaatgaagaaaatg 770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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