View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8099_low_10 (Length: 293)
Name: NF8099_low_10
Description: NF8099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8099_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 39610585 - 39610308
Alignment:
| Q |
1 |
caccacatgttaactaaattatgtaaaagatggtacagtactgattccacatagcaacaagttcagtgtaatcctttcaatactacaagatctgaaggnn |
100 |
Q |
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| T |
39610585 |
caccacatgttaactaaattgtgtaaaagatggtacagtactgattccacatagcaacaagttcagtgtaatcctttcaatactacaagatctgaaggaa |
39610486 |
T |
|
| Q |
101 |
nnnnnnn-tacaaacttaggcttttatacgttgcaggaaaagaaatcaataatgaataccttgacgcttccgagcttcttcttctttgagcagtttttgt |
199 |
Q |
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| T |
39610485 |
aaaaaaaatacaaacttaggcttttatacgttgcaggaaaagaaatcaataatgaataccttgacgcttccgagcttcttcttctttgagcagtttttgt |
39610386 |
T |
|
| Q |
200 |
tttctctcctcttccagctcaagataatacttcaattttctcattttttccctctcctgtttcctggagggtaaaatc |
277 |
Q |
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| T |
39610385 |
tttctctcctcttccagctcaagataatacttcaattttctcattttttccctctcctgtttcctggagggtaaaatc |
39610308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 136 - 278
Target Start/End: Original strand, 40159258 - 40159400
Alignment:
| Q |
136 |
gaaaagaaatcaataatgaataccttgacgcttccgagcttcttcttctttgagcagtttttgttttctctcctcttccagctcaagataatacttcaat |
235 |
Q |
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||||| |||||||||| | |||||| ||||| |||||||||||| || | ||| ||| ||| || |||| ||||||| || |||||||||||||||| |
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| T |
40159258 |
gaaaacaaatcaataacaattaccttcacgctcccgagcttcttcctcctcacgcaatttctgtcttttctcttcttccaccttaagataatacttcaat |
40159357 |
T |
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| Q |
236 |
tttctcattttttccctctcctgtttcctggagggtaaaatct |
278 |
Q |
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| T |
40159358 |
tttctcattttttccctctcctgtttcctggagagtaaaatct |
40159400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 122 - 267
Target Start/End: Original strand, 33945429 - 33945574
Alignment:
| Q |
122 |
tttatacgttgcaggaaaagaaatcaataatgaataccttgacgcttccgagcttcttcttctttgagcagtttttgttttctctcctcttccagctcaa |
221 |
Q |
| |
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|||||| ||| |||| ||| |||| || ||||| |||||| | |||||||||||||||| || | || |||||| | ||||| ||||||| | || |
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| T |
33945429 |
tttatatgttccaggcaaacaaattaaaaatgattaccttcatgcttccgagcttcttcctcctcattcaatttttgctgtctctgttcttccaaccgaa |
33945528 |
T |
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| Q |
222 |
gataatacttcaattttctcattttttccctctcctgtttcctgga |
267 |
Q |
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|||||| |||||| || ||||||||||||||||||||||||||||| |
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| T |
33945529 |
gataatgcttcaacttcctcattttttccctctcctgtttcctgga |
33945574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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