View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8099_low_13 (Length: 276)
Name: NF8099_low_13
Description: NF8099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8099_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 247
Target Start/End: Complemental strand, 34699845 - 34699609
Alignment:
| Q |
11 |
tggtctggcaagatcttattttgtgttgaacgttgtttagatttgtcacactttgacatttctggtttgaatttagctaattttgatagttcttcaacac |
110 |
Q |
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| T |
34699845 |
tggtctggcaagatcttattttgtgttgaacgttgtttagatttgtcacactttgacatttctggtttgaatttagctaattttgatagttcttcaacac |
34699746 |
T |
|
| Q |
111 |
ttttcacaacgtcttccacgcgtgctacagtttctgtaagcaaagaaactaccgtgaccacttgaattacttccattattgggatttccatttttgcatc |
210 |
Q |
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||||||||| ||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34699745 |
ttttcacaatgtcttccacacgtgctacagtttcaataagcaaagaaattaccgtgaccacttgaattacttccattattgggatttccatttttgcatc |
34699646 |
T |
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| Q |
211 |
accaagggatgatgtttcttttgcattaacattgtgt |
247 |
Q |
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| T |
34699645 |
accaagggatgatgtttcttttgcattaacattgtgt |
34699609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 11 - 214
Target Start/End: Complemental strand, 34683611 - 34683408
Alignment:
| Q |
11 |
tggtctggcaagatcttattttgtgttgaacgttgtttagatttgtcacactttgacatttctggtttgaatttagctaattttgatagttcttcaacac |
110 |
Q |
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|||||||| ||||||| || | ||||||| ||||||| | |||||||| || |||||||||||||| || |||||||| | ||||| ||||||||||| |
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| T |
34683611 |
tggtctggtgagatcttgttgtctgttgaatgttgtttggtcttgtcacatttggacatttctggtttaaacttagctaaatctgataattcttcaacac |
34683512 |
T |
|
| Q |
111 |
ttttcacaacgtcttccacgcgtgctacagtttctgtaagcaaagaaactaccgtgaccacttgaattacttccattattgggatttccatttttgcatc |
210 |
Q |
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| T |
34683511 |
atttcacaatgtcttctacacgagctacaatttcactaagcaaagaaacaactgtgaccacttgaattaattctattattgggatttcgagttttgcatc |
34683412 |
T |
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| Q |
211 |
acca |
214 |
Q |
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|||| |
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| T |
34683411 |
acca |
34683408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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