View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8099_low_16 (Length: 240)
Name: NF8099_low_16
Description: NF8099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8099_low_16 |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 26368264 - 26368041
Alignment:
| Q |
17 |
aaaatacttatgttataaattgacctagattaggattctaacaatagttatttatattacaagctttacctcattgtattacttggctggatttcaggcg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26368264 |
aaaatacttatgttataaattgacctagattaggattctaacaatagttatttatattacaagctttacctcattgtattacttggctggatttcaggcg |
26368165 |
T |
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| Q |
117 |
accataatcaccggcttatttctaatgcaaaatagagcagtggtaatgtttggttccatcctaaactatttcattccaaaagttgagatcatattttaag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26368164 |
accataatcaccggcttatttctaatgcaaaatagagcagtggtaatgtttggttccatcctaaactatttcattccaaaagttgagatcatattttaag |
26368065 |
T |
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| Q |
217 |
aaaattttggcataaatggcatgt |
240 |
Q |
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|||||||||||||||||||||||| |
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| T |
26368064 |
aaaattttggcataaatggcatgt |
26368041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 102 - 240
Target Start/End: Original strand, 2609389 - 2609527
Alignment:
| Q |
102 |
gctggatttcaggcgaccataatcaccggcttatttctaatgcaaaatagagcagtggtaatgtttggttccatcctaaactatttcattccaaaagttg |
201 |
Q |
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||||||||||||| |||||||||||| || |||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| || |
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| T |
2609389 |
gctggatttcaggtgaccataatcacaggtttatttcttatgcaaaatagagcagtggtaatgtttggttccactctaaactattttattccaaaattta |
2609488 |
T |
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| Q |
202 |
agatcatattttaagaaaattttggcataaatggcatgt |
240 |
Q |
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| T |
2609489 |
agatcatattttaaggaaattgtagcataaatggcatgt |
2609527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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