View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8099_low_18 (Length: 224)
Name: NF8099_low_18
Description: NF8099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8099_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 5e-89; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 38110854 - 38110660
Alignment:
| Q |
1 |
ttggtgaataattggaatgctttgggaggaaaacataaatatgtacaatgggcaagagaacgtggtcaacatgtcaaaagcgacgatgacttctttacac |
100 |
Q |
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| T |
38110854 |
ttggtgaataattggaatgctttgggaggaaaacataaatatgtacaatgggcaagagaacgtggtcaacatgtcaaaagcgacgatgacttctttacac |
38110755 |
T |
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| Q |
101 |
atcccgttgttaagcaatactacaaaaaccatgttaaggtaaggtatcatatcatatcatatcatactttctttttggtgttaggtatcatatacttgtt |
200 |
Q |
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| T |
38110754 |
atcccgttgttaagcaatactacaaaaaccatgttaaggtaaggtatcatat----------catactttctttttggtgttaggtatcatatacttctt |
38110665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 38085755 - 38085615
Alignment:
| Q |
1 |
ttggtgaataattggaatgctttgggaggaaaacataaatatgtacaatgggcaagagaacgtggtcaacatgtcaaaagcgacgatgacttctttacac |
100 |
Q |
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| T |
38085755 |
ttggtgaataattggaatgattttggaggcaagaacaaatatgtgcagtgggcaaaagaacgtggtcaaaatatcaaaaacgatgatgacttctttacac |
38085656 |
T |
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| Q |
101 |
atcccgttgttaagcaatactacaaaaaccatgttaaggta |
141 |
Q |
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| T |
38085655 |
accccgttgttaagcaatactacaaaaatcatgttaaggta |
38085615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 141
Target Start/End: Complemental strand, 38142417 - 38142280
Alignment:
| Q |
4 |
gtgaataattggaatgctttgggaggaaaacataaatatgtacaatgggcaagagaacgtggtcaacatgtcaaaagcgacgatgacttctttacacatc |
103 |
Q |
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| T |
38142417 |
gtgaataattggaatgattttggaggcaaaaagaaatatgtgcagtgggcaagagaacgtggtcaaaatgtcaaaattgaagatgacttctttattaatc |
38142318 |
T |
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| Q |
104 |
ccgttgttaagcaatactacaaaaaccatgttaaggta |
141 |
Q |
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| T |
38142317 |
ctcttgttaagcaatactacaaaaacaatgttaaggta |
38142280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 4 - 141
Target Start/End: Complemental strand, 38155763 - 38155626
Alignment:
| Q |
4 |
gtgaataattggaatgctttgggaggaaaacataaatatgtacaatgggcaagagaacgtggtcaacatgtcaaaagcgacgatgacttctttacacatc |
103 |
Q |
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| T |
38155763 |
gtgaataattggaatgattttggaggcaaaaagaaatatgtgcagtgggcaagagaacgtggtcaaaatgtcaaaattgaagatgacttctttattaacc |
38155664 |
T |
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| Q |
104 |
ccgttgttaagcaatactacaaaaaccatgttaaggta |
141 |
Q |
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| T |
38155663 |
ctcttgttaagcaatactacaaaaacaatgttaaggta |
38155626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 7 - 137
Target Start/End: Complemental strand, 38090732 - 38090602
Alignment:
| Q |
7 |
aataattggaatgctttgggaggaaaacataaatatgtacaatgggcaagagaacgtggtcaacatgtcaaaagcgacgatgacttctttacacatcccg |
106 |
Q |
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|||||||||||| ||| ||||| ||| | |||||||| |||||||||||||||| ||||| | | |||| ||||| |||||||||||||| || |
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| T |
38090732 |
aataattggaataattttggaggcaaaaacaaatatgttcaatgggcaagagaacacggtcataacataaaaaatgacgacgacttctttacacaccctc |
38090633 |
T |
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| Q |
107 |
ttgttaagcaatactacaaaaaccatgttaa |
137 |
Q |
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| T |
38090632 |
ttgttaagcaatactacaaaaatcatgttaa |
38090602 |
T |
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