View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8099_low_3 (Length: 528)
Name: NF8099_low_3
Description: NF8099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8099_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 18 - 517
Target Start/End: Complemental strand, 14128086 - 14127604
Alignment:
| Q |
18 |
atttcaagaaaagttcagaattcttagaaatataaaagaagaaaataaagcaaagatagaatttctttggtggagagaagaaggtgtgtaatttgcaaga |
117 |
Q |
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| T |
14128086 |
atttcaagaaaagttcagaattcttagaaatataaaagaagaaaataaagcaaagatagaatttctttggtggagagaagaaggtgtataatttgcaaga |
14127987 |
T |
|
| Q |
118 |
ggaaaggaaaggtaaggaagaggctttgtagttgtaggagcaaaaataataatagtagcttaaataggtaggatagatgacattaatggtatgaaagaaa |
217 |
Q |
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| T |
14127986 |
ggaaaggaaaggtaaggaagaggctttgtagttgtaggagcaaaaataataatagtagcttaaataggtaggatagatgacattaatggtatgaaagaaa |
14127887 |
T |
|
| Q |
218 |
catacaaagatcaaacacacctaagttacgtccattcagtcaaatagttacaaccttaagttattttgacattttaaatcaaaatatcttagggtaatgt |
317 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
14127886 |
catacaaagatcaaacacacctaagttatgtccattcagtcaaatagttataaccttaagtgattttgactttttaaatcaaaatatcttagggtaatgt |
14127787 |
T |
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| Q |
318 |
aattttagagaatagattctctaannnnnnnncctattattcttttcatgtttcctaattttcacctttaactctcctctatacttttatttcatggtaa |
417 |
Q |
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|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14127786 |
aattttagagaatagattctctaattatttttcttattattcttttcatgtttcctaattttcacctttaactctcctctatacttttatttcatggta- |
14127688 |
T |
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| Q |
418 |
attctttatctcttttgtatcataaatacaactaagattgaaagaaattgaagagatatttaatatattagagtgcgaattcaaacctacaatgtttcat |
517 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
14127687 |
----------------gtatcataaatacaactaagattgaaagaaattgaaaagatatttaatatattagagtgcagattcaaacctacaatgtctcat |
14127604 |
T |
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