View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8099_low_5 (Length: 457)
Name: NF8099_low_5
Description: NF8099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8099_low_5 |
 | |
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| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 457
Target Start/End: Original strand, 13715210 - 13715664
Alignment:
| Q |
1 |
taaaaaagttcttatgtatgtgcttaagatcagtttcaatcaatgaccataataattatgtgatttagctatatattggtatgactacttatttgaaacc |
100 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
13715210 |
taaaaaagttcttgtgtatgtacttaagatcagtttcaatcaatgaccataataattatgtgatttagctatatattggtatgactacttatttaaaacc |
13715309 |
T |
|
| Q |
101 |
atcaccatttcaatggaactactgtaggggagttgttgaatagtattgatatnnnnnnnnnnnnngtaccaagagagagaaagagcaatgaaggagatag |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
13715310 |
atcaccatttcaatggaact---gtaggggagttgttgaatagtattgatataaaaatgaaaaaagtaccaagagagagaaagagcaatgaaggagatag |
13715406 |
T |
|
| Q |
201 |
agttggtgatggcttagataaggtgtgggtagagtatgataagatttggtggattgtctaatctaaacattnnnnnnnttggtccatcatgg-ccaattc |
299 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||| ||| |
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|
| T |
13715407 |
agttggtgatggcttagatagggtgtgggtagagtatgataagatttggtggattgtctaatctaaacattaaaaaaattggtgcatcatggaccatttc |
13715506 |
T |
|
| Q |
300 |
ttcaactcgtccaagctaaatgccacccaaaaagatatataaagatttgttcaatttgatgtgtgctgaataatatttacaatgaggtttttatagcctt |
399 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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|
| T |
13715507 |
ttctactcgtccaagctaaatgccacccaaaaagatatataaagatttgttcaatttgatgtgtgttgaataatatttacaatgaggtttttataaactt |
13715606 |
T |
|
| Q |
400 |
atagcatgtttgtcattgcctttgacacaccacgttctatagaaagctacggtaatgt |
457 |
Q |
| |
|
|||||||||||| |||||| ||||||| ||||||||||||||||| | |||||||||| |
|
|
| T |
13715607 |
atagcatgtttgccattgcgtttgacaaaccacgttctatagaaaaccacggtaatgt |
13715664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 2 - 326
Target Start/End: Complemental strand, 4848802 - 4848480
Alignment:
| Q |
2 |
aaaaaagttcttatgtatgtgcttaagatcagtttcaatcaatgaccataataattatgtgatttagctatatattggtatgactacttatttgaaacca |
101 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4848802 |
aaaaaagttcttgtgtatgtgcttaagatcagtttcaatcaatgaccataataattatgtgatttagctatatattggtatgactgcttatttgaaacca |
4848703 |
T |
|
| Q |
102 |
tcaccatttcaatggaactactgtaggggagttgttgaatagtattgatatnnnnnnnnnnnnngtaccaagagagagaaagagcaatgaaggagataga |
201 |
Q |
| |
|
|||||||||||||| | |||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4848702 |
tcaccatttcaatg---caactgcaggggagttgttgaataatattgatataaaaataaaaaaagtaccaagagagagaaagagcaatgaaggagataga |
4848606 |
T |
|
| Q |
202 |
gttggtgatggcttagataaggtgtgggtagagtatgataagatttggtggattgtctaatctaaacattnnnnnnnttggtccatcat-ggccaattct |
300 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||| ||||||| |||||||||||||| ||| |||||||| |||||||| |
|
|
| T |
4848605 |
gttggtgatggcttagatagagtctgggtagagtatgataagatttgatggattgcctaatctaaacattaaaaaaattgatccatcatacaccaattct |
4848506 |
T |
|
| Q |
301 |
tcaactcgtccaagctaaatgccacc |
326 |
Q |
| |
|
|||||| |||||| |||||||||||| |
|
|
| T |
4848505 |
tcaactagtccaaactaaatgccacc |
4848480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 175 - 326
Target Start/End: Complemental strand, 14659154 - 14659002
Alignment:
| Q |
175 |
gagagaaagagcaatgaaggagatagagttggtgatggcttagataaggtgtgggtagagtatgataagatttggtggattgtctaatctaaacattnnn |
274 |
Q |
| |
|
|||||| ||| ||||||| |||||||||||| |||||||| |||| |||||| |||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
14659154 |
gagagagagaacaatgaaagagatagagttgatgatggctaagatttagtgtggatagagtatgataagatttcatggatagtctaatctaaacattaaa |
14659055 |
T |
|
| Q |
275 |
nnnnttggtccatcatgg-ccaattcttcaactcgtccaagctaaatgccacc |
326 |
Q |
| |
|
||| |||||||||| |||||||||||| | ||||||||||||| |||| |
|
|
| T |
14659054 |
aaaattgatccatcatggaccaattcttcaattgatccaagctaaatggcacc |
14659002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 45907975 - 45908296
Alignment:
| Q |
1 |
taaaaaagttcttatgtatgtgcttaagatcagtttcaatcaatgaccataataattatgtgatttagctatatattggtatgactacttatttgaaacc |
100 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45907975 |
taaaaaagttcttgtgaatgtgcttaagatcagtttcaatcaatgaccataataattatgtgatttagctatatattggtatgactacttatttgaaacc |
45908074 |
T |
|
| Q |
101 |
atcaccatttcaatggaactactgtaggggagttgttgaatagtattgatatnnnnnnnnnnnnngtaccaagagagagaaagagcaatgaaggagatag |
200 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
45908075 |
atcaccatttcaatgga---actgcaggggagttgttgaatagtattgatataaaaatgaaaaaagtaccaagagagagaaagagcaatgaag--gatag |
45908169 |
T |
|
| Q |
201 |
agttggtgatggcttagataaggtgtgggtagagtatgataagatttggtggattgtctaatctaaacattnnnnnnnttggtccatcatgg-ccaattc |
299 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||| |
|
|
| T |
45908170 |
agttggtgatggcttagatagggtgtgggtagagtatgataagatttggtggattgtctaatctaaacattaaaaaaattggtccatcatggacaaattt |
45908269 |
T |
|
| Q |
300 |
ttcaactcgtccaagctaaatgccacc |
326 |
Q |
| |
|
||||||| ||||||||||||| ||||| |
|
|
| T |
45908270 |
ttcaactggtccaagctaaataccacc |
45908296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 22917351 - 22917219
Alignment:
| Q |
17 |
tatgtgcttaagatcagtttcaatcaatgaccataataattatgtgatttagctatatattggtatgactacttatttgaaaccatcaccatttcaatgg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
22917351 |
tatgtgcttaagatcagtttcaatcaatgaccataataattatgtgatttagctatatattggtatgactacttatttgaaaccatcaccctttcaatgg |
22917252 |
T |
|
| Q |
117 |
aactactgtaggggagttgttgaatagtattgatat |
152 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||| |
|
|
| T |
22917251 |
aactac---atgggagttgttgaatagtattgatat |
22917219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 166 - 319
Target Start/End: Original strand, 4784994 - 4785148
Alignment:
| Q |
166 |
gtaccaagagagagaaagagcaatgaaggagatagagttggtgatggcttagataaggtgtgggtagagtatgataagatttggtggattgtctaatcta |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4784994 |
gtaccaagagagagaaagagcaatgaaggagatagagttggtgatggcttagatagagtgtgggtagagtatgataagatttggtggattgtctaatcta |
4785093 |
T |
|
| Q |
266 |
aacattnnnnnnnttggtccatcatgg-ccaattcttcaactcgtccaagctaaa |
319 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
4785094 |
cacattaaaaaaattggtccatcatggaccaattcttcaactggtccaagctaaa |
4785148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 4784152 - 4784274
Alignment:
| Q |
1 |
taaaaaagttcttatgtatgtgcttaagatcagtttcaatcaatgaccataataattatgtgatttagctatatattggtatgac---tacttatttgaa |
97 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
4784152 |
taaaaaagttctcgtgtatgtgcttaagatcagtttcaatcaatgaccataataattatgtgatttagctatatattggtatgactagtacttgtttgaa |
4784251 |
T |
|
| Q |
98 |
accatcaccatttcaatggaact |
120 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
4784252 |
accatcaccatttcaatggaact |
4784274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 166 - 327
Target Start/End: Complemental strand, 22917186 - 22917026
Alignment:
| Q |
166 |
gtaccaagagagagaaagagcaatgaaggagatagagttggtgatggcttagataaggtgtgggtagagtatg-------ataagatttggtggattgtc |
258 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
22917186 |
gtaccaagagagagaaagagcaaggaaggagatagagttggtgatggcttagatagggtgtgggtagagtatgataactgataagatttggtggattgtc |
22917087 |
T |
|
| Q |
259 |
taatctaaacattnnnnnnnttggtccatcatggccaattcttcaactcgtccaagctaaatgccaccc |
327 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
22917086 |
taatctaaacattaaaaaaattggtc--------ccaattcttcaactggtccaagctaaatgccaccc |
22917026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 5320150 - 5320185
Alignment:
| Q |
17 |
tatgtgcttaagatcagtttcaatcaatgaccataa |
52 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5320150 |
tatgtgcttgagatcagtttcaatcaatgaccataa |
5320185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 166 - 323
Target Start/End: Original strand, 39773695 - 39773853
Alignment:
| Q |
166 |
gtaccaagagagagaaagagcaatgaaggagatagagttggtgatggcttagataaggtgtgggtagagtatgataagatttggtggattgtctaatcta |
265 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39773695 |
gtaccaagagagaaaaagagcaatgaaggagatagagttggtgatggcttagatagggtgtgggtagagtatgatatgatttggtggattgtctaatcta |
39773794 |
T |
|
| Q |
266 |
aacattnnnnnnnttggtccatcatgg-ccaattcttcaactcgtccaagctaaatgcc |
323 |
Q |
| |
|
|||||| |||| ||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
39773795 |
aacattaaaaaaattggcccatcatggaccaattcttcaactggtccaagctaaatgcc |
39773853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 3 - 97
Target Start/End: Original strand, 39773556 - 39773650
Alignment:
| Q |
3 |
aaaaagttcttatgtatgtgcttaagatcagtttcaatcaatgaccataataattatgtgatttagctatatattggtatgactacttatttgaa |
97 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39773556 |
aaaaagttcttgtgtatgtgcttaagatcagtttcaatcaatgaccataataattatgtgatttagctatatattggtatgactacttatttgaa |
39773650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 175 - 326
Target Start/End: Complemental strand, 6127220 - 6127068
Alignment:
| Q |
175 |
gagagaaagagcaatgaaggagatagagttggtgatggcttagataaggtgtgggtagagtatgataagatttggtggattgtctaatctaaacattnnn |
274 |
Q |
| |
|
|||||| ||| ||||||| |||||||||||| |||||||| |||| |||||| |||| |||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
6127220 |
gagagagagaacaatgaaagagatagagttgatgatggctaagatttagtgtggatagaatatgataagatttgatggatagtctaatctaaacattaaa |
6127121 |
T |
|
| Q |
275 |
nnnnttggtccatcatgg-ccaattcttcaactcgtccaagctaaatgccacc |
326 |
Q |
| |
|
|||||||||||||| |||||||||||| | || |||||||||| |||| |
|
|
| T |
6127120 |
aaaattggtccatcatggaccaattcttcaattgatctaagctaaatgacacc |
6127068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 177 - 271
Target Start/End: Complemental strand, 44398368 - 44398274
Alignment:
| Q |
177 |
gagaaagagcaatgaaggagatagagttggtgatggcttagataaggtgtgggtagagtatgataagatttggtggattgtctaatctaaacatt |
271 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||| |||||| |||| |||||| ||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
44398368 |
gagagagaacaatgaaagagatagagttggtaatggctaagatttagtgtggatagagtatgataagatttgatggatagtctaatctaaacatt |
44398274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 186 - 321
Target Start/End: Complemental strand, 43810969 - 43810833
Alignment:
| Q |
186 |
caatgaaggagatagagttggtgatggcttagataaggtgtgggtagagtatgataagatttggtggattgtctaatctaaacattnnnnnnnttggtcc |
285 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||| |||||| |||||| ||||||||||| ||||| |||||||||||| ||| ||||||| |
|
|
| T |
43810969 |
caatgaaagagatagagttggtgatggctaagatttagtgtggatagagttcgataagatttgatggatagtctaatctaaatattaaaaaaattggtcc |
43810870 |
T |
|
| Q |
286 |
atcat-ggccaattcttcaactcgtccaagctaaatg |
321 |
Q |
| |
|
||||| |||||| ||||| | |||||||||||||| |
|
|
| T |
43810869 |
atcataaaccaattattcaattggtccaagctaaatg |
43810833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 401 - 455
Target Start/End: Original strand, 26353346 - 26353400
Alignment:
| Q |
401 |
tagcatgtttgtcattgcctttgacacaccacgttctatagaaagctacggtaat |
455 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||| | |||||||| |
|
|
| T |
26353346 |
tagcatgtttgtcattgcgtttgacaaaccacgttctatagaaaaccacggtaat |
26353400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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