View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8099_low_6 (Length: 446)
Name: NF8099_low_6
Description: NF8099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8099_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Original strand, 32579907 - 32580342
Alignment:
| Q |
1 |
atgcatttttaatcaccgcaacatcaaagtttttggtatttatcgacatcaacccgataaggtccgcctttgtaccaggtccatattaggcacctcaata |
100 |
Q |
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| T |
32579907 |
atgcatttttaatcaccgcaacatcaaagtttttggtatttatcgacatcaacccgataaggtccgcctttgtaccaggtccatattaggcacctcaata |
32580006 |
T |
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| Q |
101 |
aacatgttgaaaacaagtagttttcaacaccttgttacggtnnnnnnnnnnnnnnnnngacatggaattctgaacagaatcctgaattccctcaagatgt |
200 |
Q |
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| T |
32580007 |
aacatgttgaaaacaagtagttttcaacatcttgttacggtaaaagaaaagaaaaaaagacatggaattctgaacagaatcctgaattccctcaagatgt |
32580106 |
T |
|
| Q |
201 |
ggattaaggaagaacaatcacttctttataaaagatatggaattaagtacaataatttcatgagacacacaagaatactatccaaagccaaaatgcccaa |
300 |
Q |
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| T |
32580107 |
ggattaaggaagaacaatcacttctttataaaagatatggaattaagtacaataatttcatgagacacacaagaatactatccaaagccaaaatgcccaa |
32580206 |
T |
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| Q |
301 |
agtggacacactagcaatggattcaagataatcaactcaccaagggaaaaaagtaaacataaaaatataattcatatgcaattttcatgtatgatctgta |
400 |
Q |
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| T |
32580207 |
agtggacacactagcaatggattcaagataatcaactcaccaagggaaaaaagtaaacataaaaatataattcatatgcaattttcatgtatgatttgta |
32580306 |
T |
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| Q |
401 |
taaagcaatgatatattgcttgatcaccaagtatta |
436 |
Q |
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| T |
32580307 |
taaagcaatgatatattgcttgatcaccaagtatta |
32580342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 32581587 - 32581622
Alignment:
| Q |
1 |
atgcatttttaatcaccgcaacatcaaagtttttgg |
36 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
32581587 |
atgcatttttaatcaccgcaacatcaaagtttttgg |
32581622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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