View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8099_low_9 (Length: 319)
Name: NF8099_low_9
Description: NF8099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8099_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 15172199 - 15171890
Alignment:
| Q |
1 |
tagcatatcgatcgtgacgatcaataccatcaaatctttgaggaaattggacatagcagagtttcttccctagttgaggatccattaggaagcacatggc |
100 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
15172199 |
tagcatatctatcgtgacgatcaataccatcaaatctttgaggaaattggacatagcagagtttcttccctagttgaggatccataaggaagcacatggc |
15172100 |
T |
|
| Q |
101 |
ttctctaagagccttgctattgttgatgtagtgatcacaatcgagattcaacatgaatggtgcatttgtaagcacagcagaaactcgaaccttttgaaga |
200 |
Q |
| |
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||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
15172099 |
ctctcttagagccttgctattgttgatgtaatgatcacaatcgagattcaacatgaatggtgcatttgtaagcacagcagaaactcgaaccttttgagga |
15172000 |
T |
|
| Q |
201 |
cag---acaaaaacaacaagagttata--aacaaacatgtctctgatatcctaatcctgcaggaattaaacaattcaataccatgtttttgaacttacca |
295 |
Q |
| |
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|| ||||||||||||| | || | | ||||| | |||||||||||| |||| | ||| ||||||||| |||||||||||| ||||||||||| |
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| T |
15171999 |
tagacaacaaaaacaacaatatctagagttataaacagttttctgatatcctagtcctaccagaactaaacaattgaataccatgtttctgaacttacca |
15171900 |
T |
|
| Q |
296 |
aagcgttcat |
305 |
Q |
| |
|
|||||||||| |
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|
| T |
15171899 |
aagcgttcat |
15171890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 5127670 - 5127722
Alignment:
| Q |
3 |
gcatatcgatcgtgacgatcaataccatcaaatctttgaggaaattggacata |
55 |
Q |
| |
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||||||||||| |||||||||||||||||||||||| || ||||| ||||| |
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|
| T |
5127670 |
gcatatcgatcactacgatcaataccatcaaatctttgggggaattgcacata |
5127722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 197
Target Start/End: Complemental strand, 30258366 - 30258190
Alignment:
| Q |
21 |
tcaataccatcaaatctttgaggaaattggacatagcagagtttcttccctagttgaggatccattaggaagcacatggcttctctaagagccttgctat |
120 |
Q |
| |
|
||||| |||||||| ||| | |||||||||||||| | ||||| || ||| |||| ||||||||||||||||| | || |||||||||||||||| |
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| T |
30258366 |
tcaatgccatcaaaccttcgtggaaattggacataagcggtcttctttccaagtagagggtccattaggaagcacatagactccctaagagccttgctat |
30258267 |
T |
|
| Q |
121 |
tgttgatgtagtgatcacaatcgagattcaacatgaatggtgcatttgtaagcacagcagaaactcgaaccttttga |
197 |
Q |
| |
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| |||||||| ||||||||||| |||||||||| || |||||||| ||||||| ||||||||||||| ||||||| |
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|
| T |
30258266 |
tattgatgtattgatcacaatccagattcaacacaaaaggtgcattgctaagcaccgcagaaactcgaagcttttga |
30258190 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 142
Target Start/End: Original strand, 44376702 - 44376838
Alignment:
| Q |
6 |
tatcgatcgtgacgatcaataccatcaaatctttgaggaaattggacatagcagagtttcttccctagttgaggatccattaggaagcacatggcttctc |
105 |
Q |
| |
|
|||| ||| ||||||||||| ||||||||||||||||||||||| |||||||| | ||| |||||| | ||||||||| | ||| ||||||||||| | |
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| T |
44376702 |
tatctatcatgacgatcaattccatcaaatctttgaggaaattgcacatagcatatttttttccctgatgtaggatccatcatgaaacacatggcttcac |
44376801 |
T |
|
| Q |
106 |
taagagccttgctattgttgatgtagtgatcacaatc |
142 |
Q |
| |
|
||| ||||| || ||||| |||||||| |||||||| |
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|
| T |
44376802 |
gaagggccttactgttgtttatgtagtggtcacaatc |
44376838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 54382895 - 54383075
Alignment:
| Q |
1 |
tagcatatcgatcgtgacgatcaataccatcaaatctttgaggaaattggacatagcagagtttcttccctagttgaggatccattaggaagcacatggc |
100 |
Q |
| |
|
||||||||||||| || |||||| ||||| |||||||||||||| ||||||||||||| |||||||||| ||| || ||||| | |||||||||||| |
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| T |
54382895 |
tagcatatcgatcatgcgcatcaatgccatcgaatctttgaggaaactggacatagcagactttcttccctgtttgggggtccatcaagaagcacatggc |
54382994 |
T |
|
| Q |
101 |
ttctctaagagccttgctattgttgatgtagtgatcacaatcgagattcaacatgaatggtgcatttgtaagcacagcaga |
181 |
Q |
| |
|
|||| | ||||||||| || ||||| || ||||||||||| | |||| ||| || || |||||||||||||| ||||| |
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|
| T |
54382995 |
ctctcggacagccttgctgttattgatataatgatcacaatccaagttcagcataaaaggagcatttgtaagcactgcaga |
54383075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 29917973 - 29918015
Alignment:
| Q |
19 |
gatcaataccatcaaatctttgaggaaattggacatagcagag |
61 |
Q |
| |
|
|||||||||| ||||| |||||||| ||||||||||||||||| |
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|
| T |
29917973 |
gatcaataccctcaaacctttgagggaattggacatagcagag |
29918015 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 139
Target Start/End: Original strand, 38720023 - 38720142
Alignment:
| Q |
20 |
atcaataccatcaaatctttgaggaaattggacatagcagagtttcttccctagttgaggatccattaggaagcacatggcttctctaagagccttgcta |
119 |
Q |
| |
|
|||||| |||||||||||||| |||||||| |||||||||| ||||| || |||||||| ||||| | || |||||||| |||||||||||||||||| |
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| T |
38720023 |
atcaattccatcaaatctttgtggaaattgtacatagcagatcttcttgccaagttgagggtccatcataaaacacatggcctctctaagagccttgcta |
38720122 |
T |
|
| Q |
120 |
ttgttgatgtagtgatcaca |
139 |
Q |
| |
|
|| |||||||| |||||||| |
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| T |
38720123 |
ttattgatgtaatgatcaca |
38720142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 13825329 - 13825518
Alignment:
| Q |
3 |
gcatatcgatcgtgacgatcaataccatcaaatctttgaggaaattggacatagcagagtttcttccctagttgaggatccattaggaagcacatggctt |
102 |
Q |
| |
|
||||||||||||| | ||||||||||||||| || || ||||| ||||||||||| | | || || || | ||||||||| | |||||||| || | |
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|
| T |
13825329 |
gcatatcgatcgttcctatcaataccatcaaacctctgtggaaactggacatagcaaacatgtttaccgaggttaggatccatcataaagcacatagcct |
13825428 |
T |
|
| Q |
103 |
ctctaagagccttgctattgttgatgtagtgatcacaatcgagattcaacatgaatggtgcatttgtaagcacagcagaaactcgaacct |
192 |
Q |
| |
|
| || | |||||||| ||||| ||||||||||||||||| |||||||| | ||| ||| |||| ||||| |||||||| |||||||||| |
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|
| T |
13825429 |
ccctcaaggccttgctgttgtttatgtagtgatcacaatcaagattcaataagaaaggtccattagtaaggacagcagatactcgaacct |
13825518 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 43435361 - 43435550
Alignment:
| Q |
3 |
gcatatcgatcgtgacgatcaataccatcaaatctttgaggaaattggacatagcagagtttcttccctagttgaggatccattaggaagcacatggctt |
102 |
Q |
| |
|
|||||||| |||| | ||||||||||||||| || || ||||| ||||||||||| | | || || || | ||||||||| | |||||||| |||| |
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|
| T |
43435361 |
gcatatcggtcgttcctatcaataccatcaaacctctgtggaaactggacatagcaaacatatttaccgaggttaggatccatcataaagcacatagctt |
43435460 |
T |
|
| Q |
103 |
ctctaagagccttgctattgttgatgtagtgatcacaatcgagattcaacatgaatggtgcatttgtaagcacagcagaaactcgaacct |
192 |
Q |
| |
|
| || | |||||||| ||||| ||||||||||||||||| |||||||| | ||| ||| |||| ||||| ||| |||| |||||||||| |
|
|
| T |
43435461 |
ccctcaaggccttgctgttgtttatgtagtgatcacaatcaagattcaataagaaaggtccattagtaagaacaccagatactcgaacct |
43435550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 192
Target Start/End: Original strand, 1176187 - 1176301
Alignment:
| Q |
78 |
ggatccattaggaagcacatggcttctctaagagccttgctattgttgatgtagtgatcacaatcgagattcaacatgaatggtgcatttgtaagcacag |
177 |
Q |
| |
|
|||||||| | ||| ||||| |||||||||| ||||||||||||||||||||| |||| | | |||| ||||||| || |||||||| | |||||||| |
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|
| T |
1176187 |
ggatccatcatgaaacacattgcttctctaatagccttgctattgttgatgtaatgattatagtcgaagttcaacacaaaaggtgcattggaaagcacag |
1176286 |
T |
|
| Q |
178 |
cagaaactcgaacct |
192 |
Q |
| |
|
||| |||| ||||| |
|
|
| T |
1176287 |
aagacactctaacct |
1176301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 192
Target Start/End: Complemental strand, 9479372 - 9479183
Alignment:
| Q |
3 |
gcatatcgatcgtgacgatcaataccatcaaatctttgaggaaattggacatagcagagtttcttccctagttgaggatccattaggaagcacatggctt |
102 |
Q |
| |
|
||||||||||||| | ||||||||||||||| || || |||||||| |||||||| | || || || || | |||||||| | || ||||| |||| |
|
|
| T |
9479372 |
gcatatcgatcgttcctatcaataccatcaaacctctgtggaaattgaacatagcaaacattttttccaaggttgggatccatcataaaacacatagctt |
9479273 |
T |
|
| Q |
103 |
ctctaagagccttgctattgttgatgtagtgatcacaatcgagattcaacatgaatggtgcatttgtaagcacagcagaaactcgaacct |
192 |
Q |
| |
|
| || | || ||||| ||||| ||||| ||||||||||| |||||||| | ||| ||| |||| ||||||||||| || || ||||||| |
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|
| T |
9479272 |
ccctcaaggctttgctgttgtttatgtaatgatcacaatcaagattcaataagaaaggtccattagtaagcacagctgatacacgaacct |
9479183 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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