View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8100_high_11 (Length: 435)

Name: NF8100_high_11
Description: NF8100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8100_high_11
NF8100_high_11
[»] chr1 (5 HSPs)
chr1 (1-423)||(9796948-9797370)
chr1 (4-246)||(49641073-49641315)
chr1 (184-267)||(52777905-52777988)
chr1 (184-246)||(20775187-20775249)
chr1 (185-270)||(6530897-6530982)
[»] chr4 (7 HSPs)
chr4 (4-246)||(18253844-18254086)
chr4 (184-267)||(22176914-22176997)
chr4 (185-275)||(22643579-22643669)
chr4 (184-267)||(35087429-35087512)
chr4 (4-225)||(13987845-13988066)
chr4 (185-255)||(16986775-16986845)
chr4 (184-255)||(23167432-23167503)
[»] chr2 (6 HSPs)
chr2 (8-225)||(20042902-20043119)
chr2 (184-275)||(27036131-27036222)
chr2 (185-255)||(21809109-21809179)
chr2 (173-273)||(30153697-30153797)
chr2 (184-256)||(34890857-34890929)
chr2 (185-246)||(13130806-13130867)
[»] scaffold0164 (1 HSPs)
scaffold0164 (4-246)||(27146-27388)
[»] chr3 (13 HSPs)
chr3 (4-246)||(53977984-53978226)
chr3 (6-275)||(1614998-1615266)
chr3 (6-246)||(1610159-1610398)
chr3 (4-225)||(52772885-52773106)
chr3 (184-267)||(12285525-12285608)
chr3 (184-267)||(19586683-19586766)
chr3 (4-225)||(31195207-31195428)
chr3 (187-227)||(17479406-17479446)
chr3 (184-246)||(8836235-8836297)
chr3 (185-255)||(13889995-13890065)
chr3 (184-247)||(7420077-7420140)
chr3 (184-246)||(55310170-55310232)
chr3 (173-273)||(18434232-18434332)
[»] chr8 (3 HSPs)
chr8 (101-246)||(15193063-15193208)
chr8 (184-275)||(21029588-21029679)
chr8 (173-209)||(20076641-20076677)
[»] chr5 (6 HSPs)
chr5 (184-318)||(9846904-9847038)
chr5 (173-261)||(17386864-17386952)
chr5 (184-275)||(42139696-42139787)
chr5 (184-246)||(26472138-26472200)
chr5 (184-255)||(26466792-26466863)
chr5 (184-246)||(41218909-41218971)
[»] chr7 (5 HSPs)
chr7 (4-225)||(16256375-16256596)
chr7 (184-275)||(18481615-18481706)
chr7 (173-261)||(15537133-15537221)
chr7 (184-254)||(8849893-8849963)
chr7 (184-246)||(27776939-27777001)
[»] scaffold0329 (1 HSPs)
scaffold0329 (184-267)||(11234-11317)
[»] chr6 (7 HSPs)
chr6 (184-275)||(28519669-28519760)
chr6 (4-225)||(26133298-26133519)
chr6 (187-255)||(6569597-6569665)
chr6 (184-270)||(21045853-21045940)
chr6 (184-270)||(21069168-21069255)
chr6 (184-270)||(21093545-21093632)
chr6 (172-209)||(5375080-5375117)
[»] scaffold0014 (1 HSPs)
scaffold0014 (4-225)||(95851-96072)
[»] scaffold0006 (1 HSPs)
scaffold0006 (185-275)||(85888-85978)
[»] scaffold0013 (1 HSPs)
scaffold0013 (160-225)||(248968-249033)


Alignment Details
Target: chr1 (Bit Score: 411; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 9797370 - 9796948
Alignment:
Q  1 taatcgttttacttggatcatactttgtaaatctaaatctgaagtcacaaatttagttcaaaaaatcattctcatgattgaaaatcaatattaatgcact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9797370 taatcgttttacttggatcatactttgtaaatctaaatctgaagtcacaaatttagttcaaaaaatcattctcatgattgaaaatcaatattaatgcact 9797271  T
Q  101 gttaaaattgtcagaactgataatggtcctaagtttccaatgccagatttttactcaaataaaggaatagaacatcaaactagttgtgttgaaacccccc 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9797270 gttaaaactgtcagaactgataatggtcctaagtttccaatgccagatttttactcaaataaaggaatagaacatcaaactagttgtgttgaaacccccc 9797171  T
Q  201 aacaaaatgggagggtagaaagaaagcgccaacatattctaaatgtaggcagagccttattgtttcagtcaaaatcgcccaagagtttttggtcttatgc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9797170 aacaaaatgggagggtagaaagaaagcgccaacatattctaaatgtaggcagagccttattgtttcagtcaaaattgcccaagagtttttggtcttatgc 9797071  T
Q  301 agttttgcatgccactttccttatcaatcgtattcccagctctttgttacaaaataaatctcctttctatcttagatttggtaaagcacctgatctaaat 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9797070 agttttgcatgccactttccttatcaatcgtattcccagctctttgttacaaaataaatctcctttctatcttagatttggtaaagcatctgatctaaat 9796971  T
Q  401 gagttaaaagtttttggatgtct 423  Q
    |||||||||||||||||||||||    
T  9796970 gagttaaaagtttttggatgtct 9796948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 4 - 246
Target Start/End: Complemental strand, 49641315 - 49641073
Alignment:
Q  4 tcgttttacttggatcatactttgtaaatctaaatctgaagtcacaaatttagttcaaaaaatcattctcatgattgaaaatcaatattaatgcactgtt 103  Q
    ||||||||| ||||||||  | |||||| |||| ||||||||  |||| |  ||||||||  ||||||| |  || ||||| ||||   | ||||  |||    
T  49641315 tcgttttacatggatcatgttgtgtaaaactaagtctgaagtttcaaaatctgttcaaaatttcattcttaacatagaaaaccaattcaattgcaaagtt 49641216  T
Q  104 aaaattgtcagaactgataatggtcctaagtttccaatgccagatttttactcaaataaaggaatagaacatcaaactagttgtgttgaaaccccccaac 203  Q
    |||| |||||||||||||||||||||| ||||||  ||||| |||||||| ||   |||||| ||||||||||||||||||||||||||||| |||||||    
T  49641215 aaaactgtcagaactgataatggtcctgagtttcttatgcctgatttttattcttctaaaggcatagaacatcaaactagttgtgttgaaactccccaac 49641116  T
Q  204 aaaatgggagggtagaaagaaagcgccaacatattctaaatgt 246  Q
    |||||||||| || ||||| ||||  ||||||||||| |||||    
T  49641115 aaaatgggagagttgaaaggaagcatcaacatattcttaatgt 49641073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 184 - 267
Target Start/End: Original strand, 52777905 - 52777988
Alignment:
Q  184 ttgtgttgaaaccccccaacaaaatgggagggtagaaagaaagcgccaacatattctaaatgtaggcagagccttattgtttca 267  Q
    |||||||||||| |||||||||||||| || |||||||| || | |||||||||||| |||||||| ||||| ||||| |||||    
T  52777905 ttgtgttgaaactccccaacaaaatggtagagtagaaaggaaacaccaacatattctcaatgtaggtagagctttattatttca 52777988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 246
Target Start/End: Original strand, 20775187 - 20775249
Alignment:
Q  184 ttgtgttgaaaccccccaacaaaatgggagggtagaaagaaagcgccaacatattctaaatgt 246  Q
    |||||||| ||||||||||||||||||| | |||||| |||| | || ||||||||| |||||    
T  20775187 ttgtgttggaaccccccaacaaaatgggcgagtagaacgaaaacaccgacatattctcaatgt 20775249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 270
Target Start/End: Original strand, 6530897 - 6530982
Alignment:
Q  185 tgtgttgaaaccccccaacaaaatgggagggtagaaagaaagcgccaacatattctaaatgtaggcagagccttattgtttcagtc 270  Q
    ||||||||||| |||||||||||||| |||||  ||||||| |  ||||||||  ||||||| |  |||||  |||||||||||||    
T  6530897 tgtgttgaaactccccaacaaaatggtagggttaaaagaaaacatcaacatatattaaatgttgctagagctctattgtttcagtc 6530982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 4e-39; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 4 - 246
Target Start/End: Original strand, 18253844 - 18254086
Alignment:
Q  4 tcgttttacttggatcatactttgtaaatctaaatctgaagtcacaaatttagttcaaaaaatcattctcatgattgaaaatcaatattaatgcactgtt 103  Q
    ||||||||| ||||||||  | |||||| |||| ||||||||  |||| |  ||||||||  ||||||| |  || ||||| |||| | | ||||  |||    
T  18253844 tcgttttacatggatcatgttgtgtaaaactaagtctgaagtttcaaaatctgttcaaaatttcattcttaacatagaaaaccaatttaattgcaaagtt 18253943  T
Q  104 aaaattgtcagaactgataatggtcctaagtttccaatgccagatttttactcaaataaaggaatagaacatcaaactagttgtgttgaaaccccccaac 203  Q
    |||| |||||||||||||||||||||| ||||||  ||||| |||||||| ||   |||||| ||||||||||||||||||||||||||||| |||||||    
T  18253944 aaaactgtcagaactgataatggtcctgagtttcttatgcctgatttttattcttctaaaggcatagaacatcaaactagttgtgttgaaactccccaac 18254043  T
Q  204 aaaatgggagggtagaaagaaagcgccaacatattctaaatgt 246  Q
    |||||||||| || ||||| ||||  ||||||||||| |||||    
T  18254044 aaaatgggagagttgaaaggaagcatcaacatattcttaatgt 18254086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 184 - 267
Target Start/End: Complemental strand, 22176997 - 22176914
Alignment:
Q  184 ttgtgttgaaaccccccaacaaaatgggagggtagaaagaaagcgccaacatattctaaatgtaggcagagccttattgtttca 267  Q
    |||||||||||| |||||||||||||| || |||||||| || | |||||||||||| |||||||| ||||| ||||| |||||    
T  22176997 ttgtgttgaaactccccaacaaaatggtagagtagaaaggaaacaccaacatattctcaatgtaggtagagctttattatttca 22176914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 185 - 275
Target Start/End: Original strand, 22643579 - 22643669
Alignment:
Q  185 tgtgttgaaaccccccaacaaaatgggagggtagaaagaaagcgccaacatattctaaatgtaggcagagccttattgtttcagtcaaaat 275  Q
    ||||||||||| |||||||||||||||||||| ||||||||||  ||||||||| | ||||| |  |||||||| || ||||| |||||||    
T  22643579 tgtgttgaaactccccaacaaaatgggagggttgaaagaaagcatcaacatattttgaatgttgttagagccttgttatttcaatcaaaat 22643669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 267
Target Start/End: Original strand, 35087429 - 35087512
Alignment:
Q  184 ttgtgttgaaaccccccaacaaaatgggagggtagaaagaaagcgccaacatattctaaatgtaggcagagccttattgtttca 267  Q
    |||||||||||| ||||| ||||||||||| ||||| ||||| |  ||||||||||| ||||| |||||||| ||||| |||||    
T  35087429 ttgtgttgaaactccccagcaaaatgggagagtagagagaaaacatcaacatattctcaatgttggcagagctttattatttca 35087512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 225
Target Start/End: Original strand, 13987845 - 13988066
Alignment:
Q  4 tcgttttacttggatcatactttgtaaatctaaatctgaagt-cacaaatttagttcaaaaaatcattctcatgattgaaaatcaatattaatgcactgt 102  Q
    ||||||||| |||||||| || |||||||| ||||||||||| || |||  | ||||||||  ||||| ||||||| |||||||| | |   ||   |||    
T  13987845 tcgttttacctggatcatcctatgtaaatcaaaatctgaagttcaaaaacat-gttcaaaatttcattatcatgatagaaaatcagtttggttgtcatgt 13987943  T
Q  103 taaaattgtcagaactgataatggtcctaagtttccaatgccagatttttactcaaataaaggaatagaacatcaaactagttgtgttgaaaccccccaa 202  Q
    ||||| ||| || || |||||||||||| | ||||  ||| |||| || || ||   |||||| || || |||||||| |||| |||||| || ||||||    
T  13987944 taaaactgttaggacagataatggtcctgaatttcttatgtcagaattctattcttctaaaggcattgagcatcaaacaagttatgttgagactccccaa 13988043  T
Q  203 caaaatgggagggtagaaagaaa 225  Q
    ||||||||||| |||||||||||    
T  13988044 caaaatgggagagtagaaagaaa 13988066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 185 - 255
Target Start/End: Original strand, 16986775 - 16986845
Alignment:
Q  185 tgtgttgaaaccccccaacaaaatgggagggtagaaagaaagcgccaacatattctaaatgtaggcagagc 255  Q
    ||||||||||| |||||||| |||||||| || || ||||||| |||||||||| | ||||||||||||||    
T  16986775 tgtgttgaaactccccaacagaatgggagagttgagagaaagcaccaacatattttgaatgtaggcagagc 16986845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 255
Target Start/End: Complemental strand, 23167503 - 23167432
Alignment:
Q  184 ttgtgttgaaaccccccaacaaaatgggagggtagaaagaaagcgccaacatattctaaatgtaggcagagc 255  Q
    ||||||||| || ||||||||||||||||| || |||||||||| |||||| ||||| ||||| || |||||    
T  23167503 ttgtgttgagactccccaacaaaatgggagagttgaaagaaagcaccaacacattctcaatgttgggagagc 23167432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 20043119 - 20042902
Alignment:
Q  8 tttacttggatcatactttgtaaatctaaatctgaagtcacaaatttagttcaaaaaatcattctcatgattgaaaatcaatattaatgcactgttaaaa 107  Q
    ||||||||||| || ||||||||||||||||| |||||   ||||   ||||| ||| ||||||| ||||| |||||||||||| | ||||  || ||||    
T  20043119 tttacttggattattctttgtaaatctaaatcagaagttcaaaatcatgttcagaaattcattcttatgatagaaaatcaatataactgcaaagtcaaaa 20043020  T
Q  108 ttgtcagaactgataatggtcctaagtttccaatgccagatttttactcaaataaaggaatagaacatcaaactagttgtgttgaaaccccccaacaaaa 207  Q
     ||| |||||||||||||| ||  ||||||  ||||| || ||||| ||    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  20043019 ctgttagaactgataatgggccagagtttctcatgcctgacttttattcttccaaaggcatagaacatcaaactagttgtgttgaaaccccccaacaaaa 20042920  T
Q  208 tgggagggtagaaagaaa 225  Q
    ||||||||| ||||||||    
T  20042919 tgggagggtggaaagaaa 20042902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 275
Target Start/End: Complemental strand, 27036222 - 27036131
Alignment:
Q  184 ttgtgttgaaaccccccaacaaaatgggagggtagaaagaaagcgccaacatattctaaatgtaggcagagccttattgtttcagtcaaaat 275  Q
    |||||||||||| ||||| ||||||||||| ||||| ||||| |  || |||||||| ||||| |||||||| ||||| ||||| |||||||    
T  27036222 ttgtgttgaaactccccagcaaaatgggagagtagagagaaaacatcagcatattctcaatgttggcagagctttattatttcaatcaaaat 27036131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 255
Target Start/End: Complemental strand, 21809179 - 21809109
Alignment:
Q  185 tgtgttgaaaccccccaacaaaatgggagggtagaaagaaagcgccaacatattctaaatgtaggcagagc 255  Q
    ||||||||||| |||||||| |||||||| || || ||||||| |||| ||||| | ||||||||||||||    
T  21809179 tgtgttgaaactccccaacagaatgggagagttgagagaaagcaccaatatattttgaatgtaggcagagc 21809109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 273
Target Start/End: Original strand, 30153697 - 30153797
Alignment:
Q  173 catcaaactagttgtgttgaaaccccccaacaaaatgggagggtagaaagaaagcgccaacatattctaaatgtaggcagagccttattgtttcagtcaa 272  Q
    |||||||  |||||||| ||| | || ||||||||||| || ||||||||||| |  |||||||| |||||||||| ||| || || |||||||| ||||    
T  30153697 catcaaaagagttgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtagccagggctttgttgtttcattcaa 30153796  T
Q  273 a 273  Q
    |    
T  30153797 a 30153797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 256
Target Start/End: Complemental strand, 34890929 - 34890857
Alignment:
Q  184 ttgtgttgaaaccccccaacaaaatgggagggtagaaagaaagcgccaacatattctaaatgtaggcagagcc 256  Q
    |||||||||||| || ||||||||||  || || |||||||| | ||| |||||||||||||| |||||||||    
T  34890929 ttgtgttgaaacacctcaacaaaatgtcagagttgaaagaaaacaccagcatattctaaatgttggcagagcc 34890857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 13130806 - 13130867
Alignment:
Q  185 tgtgttgaaaccccccaacaaaatgggagggtagaaagaaagcgccaacatattctaaatgt 246  Q
    ||||||||||| |||||||||||||| || || ||||||||||  |||||||| || |||||    
T  13130806 tgtgttgaaactccccaacaaaatggtagagttgaaagaaagcatcaacatatccttaatgt 13130867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 4 - 246
Target Start/End: Complemental strand, 27388 - 27146
Alignment:
Q  4 tcgttttacttggatcatactttgtaaatctaaatctgaagtcacaaatttagttcaaaaaatcattctcatgattgaaaatcaatattaatgcactgtt 103  Q
    ||||||||| ||||||||  | |||||| |||| ||||||||  |||| |  ||||||||  ||||||| |  || ||||| ||||   | ||||  |||    
T  27388 tcgttttacatggatcatgttgtgtaaaactaagtctgaagtttcaaaatctgttcaaaatttcattcttaacatagaaaaccaattcaattgcaaagtt 27289  T
Q  104 aaaattgtcagaactgataatggtcctaagtttccaatgccagatttttactcaaataaaggaatagaacatcaaactagttgtgttgaaaccccccaac 203  Q
    |||| |||||||||||||||||||||| ||||||  ||||| |||||||| ||   |||||| ||||||||||||||||||||||||||||| |||||||    
T  27288 aaaactgtcagaactgataatggtcctgagtttcttatgcctgatttttattcttctaaaggcatagaacatcaaactagttgtgttgaaactccccaac 27189  T
Q  204 aaaatgggagggtagaaagaaagcgccaacatattctaaatgt 246  Q
    |||||||||| || ||||| ||||  ||||||||||| |||||    
T  27188 aaaatgggagagttgaaaggaagcatcaacatattcttaatgt 27146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 9e-37; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 4 - 246
Target Start/End: Original strand, 53977984 - 53978226
Alignment:
Q  4 tcgttttacttggatcatactttgtaaatctaaatctgaagtcacaaatttagttcaaaaaatcattctcatgattgaaaatcaatattaatgcactgtt 103  Q
    ||||||||| ||||||||  | |||||| |||| ||||||||  |||| |  ||||||||  ||||||| |  || ||||| ||||   | ||||  |||    
T  53977984 tcgttttacatggatcatgttgtgtaaaactaagtctgaagtttcaaaatctgttcaaaatttcattcttaacatagaaaaccaattcaattgcaaagtt 53978083  T
Q  104 aaaattgtcagaactgataatggtcctaagtttccaatgccagatttttactcaaataaaggaatagaacatcaaactagttgtgttgaaaccccccaac 203  Q
    |||| |||||||||||||||||||||| ||||||  ||||| |||||||| ||   |||||| ||||||||||||||||||||||||||||| |||||||    
T  53978084 aaaactgtcagaactgataatggtcctgagtttcttatgcctgatttttattcttctaaaggcatagaacatcaaactagttgtgttgaaactccccaac 53978183  T
Q  204 aaaatgggagggtagaaagaaagcgccaacatattctaaatgt 246  Q
    |||||||||| || ||||| ||||  ||||||||||| |||||    
T  53978184 aaaatgggagagttgaaaggaagcatcaacatattcttaatgt 53978226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 6 - 275
Target Start/End: Complemental strand, 1615266 - 1614998
Alignment:
Q  6 gttttacttggatcatactttgtaaatctaaatctgaagtcacaaatttagttcaaaaaatcattctcatgattgaaaatcaatattaatgcactgttaa 105  Q
    |||||||||||||||| || |||||||| |||| |||| |||| ||||| || ||||||  |||||| ||||| |||||||||||||| ||    |||||    
T  1615266 gttttacttggatcattctatgtaaatcaaaatatgaa-tcaccaatttcgtacaaaaatacattcttatgatagaaaatcaatattattggcaagttaa 1615168  T
Q  106 aattgtcagaactgataatggtcctaagtttccaatgccagatttttactcaaa-taaaggaatagaacatcaaactagttgtgttgaaaccccccaaca 204  Q
    || ||  |||||||| |||||| || ||||| | ||||  || ||||| ||    |||||| |||||||||||||| ||||||| | | || ||| ||||    
T  1615167 aactgcaagaactgacaatggtactgagttttctatgcttgaattttattcttgctaaagggatagaacatcaaacaagttgtgataagactccc-aaca 1615069  T
Q  205 aaatgggagggtagaaagaaagcgccaacatattctaaatgtaggcagagccttattgtttcagtcaaaat 275  Q
    ||||||||| |||||||||||||  ||| | ||| ||||||| || ||||| ||| | ||||| |||||||    
T  1615068 aaatgggagagtagaaagaaagcatcaatacattttaaatgtggggagagctttactttttcaatcaaaat 1614998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 6 - 246
Target Start/End: Complemental strand, 1610398 - 1610159
Alignment:
Q  6 gttttacttggatcatactttgtaaatctaaatctgaagtcacaaatttagttcaaaaaatcattctcatgattgaaaatcaatattaatgcactgttaa 105  Q
    |||||||||||||||| ||||||||||  |||| ||||||| | ||||| | ||||||| |  |||| ||||| |||||||||||||| |  |  |||||    
T  1610398 gttttacttggatcattctttgtaaattaaaatatgaagtcgccaattttg-tcaaaaattggttcttatgatagaaaatcaatattattttaaagttaa 1610300  T
Q  106 aattgtcagaactgataatggtcctaagtttccaatgccagatttttactcaaataaaggaatagaacatcaaactagttgtgttgaaaccccccaacaa 205  Q
    |||||| |||| ||||||||||| | ||||| | |||   || || || ||   |||||| |||||||||||||  ||||||||||| || ||||  |||    
T  1610299 aattgtaagaattgataatggtcttgagttttctatgattgaattatattctgctaaagggatagaacatcaaatcagttgtgttgagactccccggcaa 1610200  T
Q  206 aatgggagggtagaaagaaagcgccaacatattctaaatgt 246  Q
    |||||||| |||||||  ||||  ||||| ||| |||||||    
T  1610199 aatgggagagtagaaacgaagcatcaacacattttaaatgt 1610159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 225
Target Start/End: Original strand, 52772885 - 52773106
Alignment:
Q  4 tcgttttacttggatcatactttgtaaatctaaatctgaagt-cacaaatttagttcaaaaaatcattctcatgattgaaaatcaatattaatgcactgt 102  Q
    ||||||||| |||||||| || |||||||| ||||||||||| || |||  | ||||||||  ||||| ||||||| |||||||| | |   ||   |||    
T  52772885 tcgttttacctggatcatcctatgtaaatcaaaatctgaagttcaaaaacat-gttcaaaatttcattatcatgatagaaaatcagtttggttgtcatgt 52772983  T
Q  103 taaaattgtcagaactgataatggtcctaagtttccaatgccagatttttactcaaataaaggaatagaacatcaaactagttgtgttgaaaccccccaa 202  Q
    ||||| ||| || || |||||||||||| | ||||  ||| |||| || || ||   |||||| || || |||||||| ||||||||||| || ||||||    
T  52772984 taaaactgttaggacagataatggtcctgaatttcttatgtcagaattctattcttctaaaggcattgagcatcaaacaagttgtgttgagactccccaa 52773083  T
Q  203 caaaatgggagggtagaaagaaa 225  Q
    ||||||||||| |||||||||||    
T  52773084 caaaatgggagagtagaaagaaa 52773106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 267
Target Start/End: Original strand, 12285525 - 12285608
Alignment:
Q  184 ttgtgttgaaaccccccaacaaaatgggagggtagaaagaaagcgccaacatattctaaatgtaggcagagccttattgtttca 267  Q
    ||||||| |||| |||||||||||||| || |||||||| || | |||||||||||| |||||||| ||||| ||||| |||||    
T  12285525 ttgtgttaaaactccccaacaaaatggtagagtagaaaggaaacaccaacatattctcaatgtaggtagagctttattatttca 12285608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 267
Target Start/End: Complemental strand, 19586766 - 19586683
Alignment:
Q  184 ttgtgttgaaaccccccaacaaaatgggagggtagaaagaaagcgccaacatattctaaatgtaggcagagccttattgtttca 267  Q
    |||||||||||| |||||||||||||| || |||||||| || | |||||| ||||| |||||||| ||||| ||||| |||||    
T  19586766 ttgtgttgaaactccccaacaaaatggtagagtagaaaggaaacaccaacacattctcaatgtaggtagagctttattatttca 19586683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 225
Target Start/End: Complemental strand, 31195428 - 31195207
Alignment:
Q  4 tcgttttacttggatcatactttgtaaatctaaatctgaagt-cacaaatttagttcaaaaaatcattctcatgattgaaaatcaatattaatgcactgt 102  Q
    ||||||||| |||||||| || |||||||| ||||||||||| || |||  | ||||||||  ||||| ||||||| |||||||| | |   ||   |||    
T  31195428 tcgttttacctggatcatcctatgtaaatcaaaatctgaagttcaaaaacat-gttcaaaatttcattatcatgatagaaaatcagtttggttgtcatgt 31195330  T
Q  103 taaaattgtcagaactgataatggtcctaagtttccaatgccagatttttactcaaataaaggaatagaacatcaaactagttgtgttgaaaccccccaa 202  Q
    ||||| | | || || |||||||||||| | ||||  ||| |||| || || ||   |||||| || || |||||||| ||||||||||| || ||||||    
T  31195329 taaaactattaggacagataatggtcctgaatttcttatgtcagaattctattcttctaaaggcattgagcatcaaacaagttgtgttgagactccccaa 31195230  T
Q  203 caaaatgggagggtagaaagaaa 225  Q
    ||||||||||| |||||||||||    
T  31195229 caaaatgggagagtagaaagaaa 31195207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 17479446 - 17479406
Alignment:
Q  187 tgttgaaaccccccaacaaaatgggagggtagaaagaaagc 227  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  17479446 tgttgaaaccccccaacaaaatgggagagtagaaagaaagc 17479406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 246
Target Start/End: Original strand, 8836235 - 8836297
Alignment:
Q  184 ttgtgttgaaaccccccaacaaaatgggagggtagaaagaaagcgccaacatattctaaatgt 246  Q
    |||||||||||| |||||||||||||| || || ||||||||||  ||||||||||| |||||    
T  8836235 ttgtgttgaaactccccaacaaaatggtagagttgaaagaaagcatcaacatattcttaatgt 8836297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 255
Target Start/End: Original strand, 13889995 - 13890065
Alignment:
Q  185 tgtgttgaaaccccccaacaaaatgggagggtagaaagaaagcgccaacatattctaaatgtaggcagagc 255  Q
    ||||||||||| ||||||| ||||||| | ||| ||||||||| |||||||||||| ||||| || |||||    
T  13889995 tgtgttgaaactccccaacgaaatgggtgagtaaaaagaaagcaccaacatattcttaatgttggaagagc 13890065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 7420077 - 7420140
Alignment:
Q  184 ttgtgttgaaaccccccaacaaaatgggagggtagaaagaaagcgccaacatattctaaatgta 247  Q
    |||||||||||| |||||||||||||| ||||||||||| || | |||||| || || ||||||    
T  7420077 ttgtgttgaaactccccaacaaaatggtagggtagaaaggaaacaccaacacatcctcaatgta 7420140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 246
Target Start/End: Original strand, 55310170 - 55310232
Alignment:
Q  184 ttgtgttgaaaccccccaacaaaatgggagggtagaaagaaagcgccaacatattctaaatgt 246  Q
    |||||||||||| |||||||||||||| || || ||||||||||  ||| ||||||| |||||    
T  55310170 ttgtgttgaaactccccaacaaaatggtagagttgaaagaaagcatcaatatattcttaatgt 55310232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 273
Target Start/End: Complemental strand, 18434332 - 18434232
Alignment:
Q  173 catcaaactagttgtgttgaaaccccccaacaaaatgggagggtagaaagaaagcgccaacatattctaaatgtaggcagagccttattgtttcagtcaa 272  Q
    |||||||  |||||||| ||| | || ||||||||||| || ||||||||||| |  |||||||| |||||||||| ||| |  || |||||||| ||||    
T  18434332 catcaaaagagttgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtagccagggatttgttgtttcattcaa 18434233  T
Q  273 a 273  Q
    |    
T  18434232 a 18434232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 101 - 246
Target Start/End: Original strand, 15193063 - 15193208
Alignment:
Q  101 gttaaaattgtcagaactgataatggtcctaagtttccaatgccagatttttactcaaataaaggaatagaacatcaaactagttgtgttgaaacccccc 200  Q
    ||||||| |||||||||||||||||||||| ||||||  ||||| |||||||| ||   |||||| ||||||||||||||||||||||||||||| ||||    
T  15193063 gttaaaactgtcagaactgataatggtcctgagtttcttatgcctgatttttattcttctaaaggcatagaacatcaaactagttgtgttgaaactcccc 15193162  T
Q  201 aacaaaatgggagggtagaaagaaagcgccaacatattctaaatgt 246  Q
    ||||||||||||| || ||||| ||||  ||||||||||| |||||    
T  15193163 aacaaaatgggagagttgaaaggaagcatcaacatattcttaatgt 15193208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 275
Target Start/End: Complemental strand, 21029679 - 21029588
Alignment:
Q  184 ttgtgttgaaaccccccaacaaaatgggagggtagaaagaaagcgccaacatattctaaatgtaggcagagccttattgtttcagtcaaaat 275  Q
    ||||||||||||||||||||||||||| || || ||||||||||  ||||| ||  | ||  |||||||||||||||| | |||||||||||    
T  21029679 ttgtgttgaaaccccccaacaaaatggaagagtggaaagaaagcatcaacacatattgaacataggcagagccttattatatcagtcaaaat 21029588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 20076641 - 20076677
Alignment:
Q  173 catcaaactagttgtgttgaaaccccccaacaaaatg 209  Q
    ||||||||||||||||||||||| || ||||||||||    
T  20076641 catcaaactagttgtgttgaaacacctcaacaaaatg 20076677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 184 - 318
Target Start/End: Complemental strand, 9847038 - 9846904
Alignment:
Q  184 ttgtgttgaaaccccccaacaaaatgggagggtagaaagaaagcgccaacatattctaaatgtaggcagagccttattgtttcagtcaaaatcgcccaag 283  Q
    |||||||||||||||  |||||||||| |||||||| ||||||| |||||| ||| ||||||| |||||||| ||| | | |||||||||||  || |||    
T  9847038 ttgtgttgaaacccctgaacaaaatggtagggtagagagaaagcaccaacacattttaaatgttggcagagctttactttatcagtcaaaattacctaag 9846939  T
Q  284 agtttttggtcttatgcagttttgcatgccacttt 318  Q
     |||||||||||||||| ||||  ||||| |||||    
T  9846938 tgtttttggtcttatgctgtttgtcatgctacttt 9846904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 173 - 261
Target Start/End: Original strand, 17386864 - 17386952
Alignment:
Q  173 catcaaactagttgtgttgaaaccccccaacaaaatgggagggtagaaagaaagcgccaacatattctaaatgtaggcagagccttatt 261  Q
    ||||||||||||||||| ||| | |||||||||||||| |||||||| ||||| |  ||||||||| | |||||||| ||||| |||||    
T  17386864 catcaaactagttgtgtggaatctccccaacaaaatggaagggtagagagaaaacatcaacatattttgaatgtaggaagagcattatt 17386952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 275
Target Start/End: Original strand, 42139696 - 42139787
Alignment:
Q  184 ttgtgttgaaaccccccaacaaaatgggagggtagaaagaaagcgccaacatattctaaatgtaggcagagccttattgtttcagtcaaaat 275  Q
    ||||||||||||||||||||||||||| || || ||||||||||  ||||| ||  | ||  |||| ||||||||||| | |||||||||||    
T  42139696 ttgtgttgaaaccccccaacaaaatggaagagtggaaagaaagcatcaacacatattgaacataggtagagccttattatatcagtcaaaat 42139787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 246
Target Start/End: Original strand, 26472138 - 26472200
Alignment:
Q  184 ttgtgttgaaaccccccaacaaaatgggagggtagaaagaaagcgccaacatattctaaatgt 246  Q
    |||||||||||| |||||||||||||| || || ||||||||||  ||||||||||| |||||    
T  26472138 ttgtgttgaaactccccaacaaaatggtagagttgaaagaaagcatcaacatattcttaatgt 26472200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 255
Target Start/End: Complemental strand, 26466863 - 26466792
Alignment:
Q  184 ttgtgttgaaaccccccaacaaaatgggagggtagaaagaaagcgccaacatattctaaatgtaggcagagc 255  Q
    ||||||||| || |||||||||||||||||||| |||||||| |  || || ||| ||||||| ||||||||    
T  26466863 ttgtgttgagactccccaacaaaatgggagggttgaaagaaaacatcagcacattttaaatgttggcagagc 26466792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 246
Target Start/End: Complemental strand, 41218971 - 41218909
Alignment:
Q  184 ttgtgttgaaaccccccaacaaaatgggagggtagaaagaaagcgccaacatattctaaatgt 246  Q
    ||||||||||||||||||||||||||||  ||| ||||| ||||  ||||| ||| |||||||    
T  41218971 ttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaacacattttaaatgt 41218909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 225
Target Start/End: Original strand, 16256375 - 16256596
Alignment:
Q  4 tcgttttacttggatcatactttgtaaatctaaatctgaagt-cacaaatttagttcaaaaaatcattctcatgattgaaaatcaatattaatgcactgt 102  Q
    |||||||||||||||||| || |||||||| ||||||||||| || |||  | ||||||||  ||||| ||||||| |||||||| | |   ||   |||    
T  16256375 tcgttttacttggatcatcctatgtaaatcaaaatctgaagttcaaaaacat-gttcaaaatttcattatcatgatagaaaatcagtttagttgtcatgt 16256473  T
Q  103 taaaattgtcagaactgataatggtcctaagtttccaatgccagatttttactcaaataaaggaatagaacatcaaactagttgtgttgaaaccccccaa 202  Q
    ||||| ||| || || |||||||||||| | ||||  ||| |||| || || ||   |||||| || || |||||||| ||||||||||| || ||||||    
T  16256474 taaaactgttaggacagataatggtcctgaatttcttatgtcagaattctattcttctaaaggcattgagcatcaaacaagttgtgttgagactccccaa 16256573  T
Q  203 caaaatgggagggtagaaagaaa 225  Q
    ||||||||||| |||||||||||    
T  16256574 caaaatgggagagtagaaagaaa 16256596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 275
Target Start/End: Complemental strand, 18481706 - 18481615
Alignment:
Q  184 ttgtgttgaaaccccccaacaaaatgggagggtagaaagaaagcgccaacatattctaaatgtaggcagagccttattgtttcagtcaaaat 275  Q
    ||||||||||||||||||||||||||| || || ||||||||||  ||||| ||  | ||  |||||||||||||||| | |||||||||||    
T  18481706 ttgtgttgaaaccccccaacaaaatggaagagtggaaagaaagcatcaacacatattgaacataggcagagccttattatatcagtcaaaat 18481615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 261
Target Start/End: Original strand, 15537133 - 15537221
Alignment:
Q  173 catcaaactagttgtgttgaaaccccccaacaaaatgggagggtagaaagaaagcgccaacatattctaaatgtaggcagagccttatt 261  Q
    ||||||||||||||||| ||| | ||| |||||||||| |||||||| ||||| |  ||||||||| | |||||||| ||||| |||||    
T  15537133 catcaaactagttgtgtggaatctcccaaacaaaatggaagggtagagagaaaacatcaacatattttgaatgtaggaagagcattatt 15537221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 254
Target Start/End: Original strand, 8849893 - 8849963
Alignment:
Q  184 ttgtgttgaaaccccccaacaaaatgggagggtagaaagaaagcgccaacatattctaaatgtaggcagag 254  Q
    ||||||||| ||||  ||||||||||| ||||| |||||||| | ||||||||| || |||||||| ||||    
T  8849893 ttgtgttgagacccatcaacaaaatggtagggttgaaagaaaacaccaacatatccttaatgtaggtagag 8849963  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 246
Target Start/End: Original strand, 27776939 - 27777001
Alignment:
Q  184 ttgtgttgaaaccccccaacaaaatgggagggtagaaagaaagcgccaacatattctaaatgt 246  Q
    |||||||||||| |||||||||||||||  ||| ||||| ||||  ||||||||||| |||||    
T  27776939 ttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagcatcaacatattctcaatgt 27777001  T

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Target: scaffold0329 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 184 - 267
Target Start/End: Original strand, 11234 - 11317
Alignment:
Q  184 ttgtgttgaaaccccccaacaaaatgggagggtagaaagaaagcgccaacatattctaaatgtaggcagagccttattgtttca 267  Q
    |||||||||||| |||||||||||||| || |||||||| || | |||||||||||| |||||||| ||||| ||||| |||||    
T  11234 ttgtgttgaaactccccaacaaaatggtagagtagaaaggaaacaccaacatattctcaatgtaggtagagctttattatttca 11317  T

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Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 184 - 275
Target Start/End: Complemental strand, 28519760 - 28519669
Alignment:
Q  184 ttgtgttgaaaccccccaacaaaatgggagggtagaaagaaagcgccaacatattctaaatgtaggcagagccttattgtttcagtcaaaat 275  Q
    |||||||||||||||||||||||||||||| || ||||||||||  ||||| || || ||  |||||||||| ||||| | |||||||||||    
T  28519760 ttgtgttgaaaccccccaacaaaatgggagagtggaaagaaagcatcaacacatactcaacataggcagagctttattatatcagtcaaaat 28519669  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 225
Target Start/End: Original strand, 26133298 - 26133519
Alignment:
Q  4 tcgttttacttggatcatactttgtaaatctaaatctgaagt-cacaaatttagttcaaaaaatcattctcatgattgaaaatcaatattaatgcactgt 102  Q
    |||||||||||||||||| || |||||||| |||| |||||| || |||  | ||||||||  ||||| ||||||| |||||| | | |   ||   |||    
T  26133298 tcgttttacttggatcatcctatgtaaatcaaaatttgaagttcaaaaacat-gttcaaaatttcattatcatgatagaaaattagtttagttgtcatgt 26133396  T
Q  103 taaaattgtcagaactgataatggtcctaagtttccaatgccagatttttactcaaataaaggaatagaacatcaaactagttgtgttgaaaccccccaa 202  Q
    ||||| ||| || || |||||||||||| | ||||  ||| |||| || || ||   |||||| || || |||||||| ||||||||||| || ||||||    
T  26133397 taaaactgttaggacggataatggtcctgaatttcttatgtcagaattctattcttctaaaggcattgagcatcaaacaagttgtgttgagactccccaa 26133496  T
Q  203 caaaatgggagggtagaaagaaa 225  Q
    ||||||||||| |||||||||||    
T  26133497 caaaatgggagagtagaaagaaa 26133519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 6569665 - 6569597
Alignment:
Q  187 tgttgaaaccccccaacaaaatgggagggtagaaagaaagcgccaacatattctaaatgtaggcagagc 255  Q
    ||||||||||||||||||||||||||| ||||| ||||| |  ||| ||||||| |||||||| |||||    
T  6569665 tgttgaaaccccccaacaaaatgggagagtagagagaaaacatcaatatattctcaatgtaggaagagc 6569597  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 270
Target Start/End: Original strand, 21045853 - 21045940
Alignment:
Q  184 ttgtgttgaaaccccccaacaaaatgggagggtagaaagaaagcgcc-aacatattctaaatgtaggcagagccttattgtttcagtc 270  Q
    |||||||||||| ||||||||||||||||| || |||||||| | || |||||||||| ||||| || |||||  |||| ||||||||    
T  21045853 ttgtgttgaaactccccaacaaaatgggagagttgaaagaaatcaccaaacatattcttaatgtgggaagagctctattatttcagtc 21045940  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 270
Target Start/End: Original strand, 21069168 - 21069255
Alignment:
Q  184 ttgtgttgaaaccccccaacaaaatgggagggtagaaagaaagcgcc-aacatattctaaatgtaggcagagccttattgtttcagtc 270  Q
    |||||||||||| ||||||||||||||||| || |||||||| | || |||||||||| ||||| || |||||  |||| ||||||||    
T  21069168 ttgtgttgaaactccccaacaaaatgggagagttgaaagaaatcaccaaacatattcttaatgtgggaagagctctattatttcagtc 21069255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 270
Target Start/End: Original strand, 21093545 - 21093632
Alignment:
Q  184 ttgtgttgaaaccccccaacaaaatgggagggtagaaagaaagcgcc-aacatattctaaatgtaggcagagccttattgtttcagtc 270  Q
    |||||||||||| ||||||||||||||||| || |||||||| | || |||||||||| ||||| || |||||  |||| ||||||||    
T  21093545 ttgtgttgaaactccccaacaaaatgggagtgttgaaagaaatcaccaaacatattcttaatgtgggaagagctctattatttcagtc 21093632  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 209
Target Start/End: Complemental strand, 5375117 - 5375080
Alignment:
Q  172 acatcaaactagttgtgttgaaaccccccaacaaaatg 209  Q
    |||||||||||||||||||||||| || ||||||||||    
T  5375117 acatcaaactagttgtgttgaaacacctcaacaaaatg 5375080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 225
Target Start/End: Complemental strand, 96072 - 95851
Alignment:
Q  4 tcgttttacttggatcatactttgtaaatctaaatctgaagt-cacaaatttagttcaaaaaatcattctcatgattgaaaatcaatattaatgcactgt 102  Q
    ||||||||| |||||||| || |||||||| ||||||||||| || |||  | ||||||||  ||||| ||||||| |||||||| | |   ||   |||    
T  96072 tcgttttacctggatcatcctatgtaaatcaaaatctgaagttcaaaaacat-gttcaaaatttcattatcatgatagaaaatcagtttggttgtcatgt 95974  T
Q  103 taaaattgtcagaactgataatggtcctaagtttccaatgccagatttttactcaaataaaggaatagaacatcaaactagttgtgttgaaaccccccaa 202  Q
    ||||| ||| || || |||||||||||| | ||||  ||| |||| || || ||   |||||| || || |||||||| |||| |||||| || ||||||    
T  95973 taaaactgttaggacagataatggtcctgaatttcttatgtcagaattctattcttctaaaggcattgagcatcaaacaagttatgttgagactccccaa 95874  T
Q  203 caaaatgggagggtagaaagaaa 225  Q
    ||||||||||| |||||||||||    
T  95873 caaaatgggagagtagaaagaaa 95851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 275
Target Start/End: Original strand, 85888 - 85978
Alignment:
Q  185 tgtgttgaaaccccccaacaaaatgggagggtagaaagaaagcgccaacatattctaaatgtaggcagagccttattgtttcagtcaaaat 275  Q
    |||||||||||||| || |||||||  ||||| ||||||||||  || ||||| || ||||||||||||||  | |||||||| |||||||    
T  85888 tgtgttgaaacccctcagcaaaatgcaagggttgaaagaaagcatcagcatatacttaatgtaggcagagctcttttgtttcaatcaaaat 85978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 225
Target Start/End: Complemental strand, 249033 - 248968
Alignment:
Q  160 taaaggaatagaacatcaaactagttgtgttgaaaccccccaacaaaatgggagggtagaaagaaa 225  Q
    |||||| || || ||| |||| ||||||||||| || ||||||||||||||||| |||||||||||    
T  249033 taaaggcattgagcattaaacaagttgtgttgagactccccaacaaaatgggagagtagaaagaaa 248968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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