View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8100_high_13 (Length: 411)
Name: NF8100_high_13
Description: NF8100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8100_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 22 - 365
Target Start/End: Complemental strand, 4775807 - 4775467
Alignment:
| Q |
22 |
caccaacaatattcttagaaaacattggagctacatctctatgtgcaaaccctgtctttcagtactctaggatgaagcatattgccatagattatcattt |
121 |
Q |
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||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4775807 |
caccaacaatattctaagacaacattggagctacatatctatgtgcaaaccctgtctttca---ctctaggatgaagcatattgccatagattatcattt |
4775711 |
T |
|
| Q |
122 |
tgttcgcgatctcgttgccgccaagaagcttcaagtttcacatgtcccaacaagtcatcaaccagtcgatcttctaacaaagccgttatcctcggtacgg |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4775710 |
tgttcgcgatctcgttgccgccaagaagcttcaagtttcacatgtcccaacaagtcatcaaccagtcgatcttctaacaaagccgttatcctcggtacgg |
4775611 |
T |
|
| Q |
222 |
catcacttccttaaagacaagattggagttattgatgatacctccttcttgagggggcgtgtaggagtattaacttaagcattgaccaaatcaaagaata |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4775610 |
catcacttccttaaagacaagattggagttattgatgatacctccttcttgagggggcgtgtaggagtattaacttaagcattgaccaaatcaaagaata |
4775511 |
T |
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| Q |
322 |
atggttgtaataatatctgtaaatggaaatcatatcccatagta |
365 |
Q |
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| T |
4775510 |
atggttgtaataatatctgtaaatggaaatcatatcccatagta |
4775467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 22 - 354
Target Start/End: Complemental strand, 43061168 - 43060836
Alignment:
| Q |
22 |
caccaacaatattcttagaaaacattggagctacatctctatgtgcaaaccctgtctttcagtactctaggatgaagcatattgccatagattatcattt |
121 |
Q |
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| T |
43061168 |
caccaacgatattctcagacaacattagagctacatatctatgtgcaaaccctgtttttcacta---taggatgaaacacattgccatagattatcattt |
43061072 |
T |
|
| Q |
122 |
tgttcgcgatctcgttgccgc---caagaagcttcaagtttcacatgtcccaacaagtcatcaaccagtcgatcttctaacaaagccgttatcctcggta |
218 |
Q |
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|||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||| | | ||||||||| ||||||||||||||||||||| |
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| T |
43061071 |
tgtttgcgatctcgttgctgctgccaagaagcttcaagtttcacatgtcccaacaagtcatcagctacccgatcttctcacaaagccgttatcctcggta |
43060972 |
T |
|
| Q |
219 |
cggcatcacttccttaaagacaagattggagttattgatgatacctccttcttgagggggcgtgtaggagtattaacttaagcattgaccaaatcaaaga |
318 |
Q |
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| T |
43060971 |
cgacatcacttccttaaagacaagattggagttattgatgatacctccatcttgagcgggcgtgtaggagtattaacttaagcatttaccaaatcaaata |
43060872 |
T |
|
| Q |
319 |
ataatggttgtaataatatctgtaaatggaaatcat |
354 |
Q |
| |
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| T |
43060871 |
acaatggttgtaatgatatcagtaaatggaaatcat |
43060836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 281 - 391
Target Start/End: Complemental strand, 448677 - 448564
Alignment:
| Q |
281 |
tgtaggagtattaacttaa---gcattgaccaaatcaaagaataatggttgtaataatatctgtaaatggaaatcatatcccatagtaaatagccaatta |
377 |
Q |
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||||||||||||||||||| ||||||||||||||||| ||| |||| |||||||||||| |||||||||||||||||| ||||||| |||||||||| |
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| T |
448677 |
tgtaggagtattaacttaattagcattgaccaaatcaaataatgatgggtgtaataatatcagtaaatggaaatcatatcttatagtaactagccaatta |
448578 |
T |
|
| Q |
378 |
gtatagttgactgt |
391 |
Q |
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| T |
448577 |
gtatagttgactgt |
448564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 45192874 - 45192914
Alignment:
| Q |
42 |
aacattggagctacatctctatgtgcaaaccctgtctttca |
82 |
Q |
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|||||||||||||||| ||||||||||||||||||| |||| |
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| T |
45192874 |
aacattggagctacatatctatgtgcaaaccctgtccttca |
45192914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 299
Target Start/End: Complemental strand, 42019520 - 42019449
Alignment:
| Q |
228 |
ttccttaaagacaagattggagttattgatgatacctccttcttgagggggcgtgtaggagtattaacttaa |
299 |
Q |
| |
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|||||||||||||||||||||||| |||| |||| |||| | || |||||| || ||||||||| |||||| |
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| T |
42019520 |
ttccttaaagacaagattggagttcttgaagataactccattttcagggggagtaaaggagtatttacttaa |
42019449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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