View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8100_high_16 (Length: 394)
Name: NF8100_high_16
Description: NF8100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8100_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 30106373 - 30105998
Alignment:
| Q |
1 |
atcaaattctgaccgtcatcttcatcatagaatgaaataggctttctaccggttatgagctctacaagcacaaccccgaaactgtatacatcactcttat |
100 |
Q |
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| T |
30106373 |
atcaaattctgaccgtcatcttcatcatagaatgaaataggctttctactggttatgagctctacaagcacgaccccgaaactgtatacatcactcttat |
30106274 |
T |
|
| Q |
101 |
tagtgaattgattggactggaaatattcagggtctatgtacccgtaagttccacctacaaatgtggttaggtgagtcttatctagtggtattgatcttga |
200 |
Q |
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| T |
30106273 |
tagtgaattgattggactggaaatattcaggatctatgtacccgtaagttccacctacaaatgtggttaggtgagtcttatctagtggtattgatcttga |
30106174 |
T |
|
| Q |
201 |
tgtcccaaaatcagataccttggcactaaagttactgtctagtagtatgtttgtgggttttatgtctctgtggaagattggaatagaagccgaaaaatgc |
300 |
Q |
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| T |
30106173 |
tgtcccaaaatcagataccttggcactaaagttactgtctagtagtatgtttgtgggttttatgtctctgtggaagattggaatagaagccgaaaaatgc |
30106074 |
T |
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| Q |
301 |
atatatgccactgctccagcaatttcacatgcaattcttaggcggttttcccatgaaagggaggactcttggtctt |
376 |
Q |
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| T |
30106073 |
atatatgccactgctccagcaacttcacatgcaattcttaggcggttttcccatgaaagggaggactcttggtctt |
30105998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 6 - 362
Target Start/End: Complemental strand, 30116459 - 30116103
Alignment:
| Q |
6 |
attctgaccgtcatcttcatcatagaatgaaataggctttctaccggttatgagctctacaagcacaaccccgaaactgtatacatcactcttattagtg |
105 |
Q |
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| T |
30116459 |
attctgaccctcatcttcatcattgaatgttattggctttctaccggttataagctcaacaagcaccacgccgaaactatatacatcactcttatctgta |
30116360 |
T |
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| Q |
106 |
aattgattggactggaaatattcagggtctatgtacccgtaagttccacctacaaatgtggttaggtgagtcttatctagtggtattgatcttgatgtcc |
205 |
Q |
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|||||| | ||||| ||||||||||| || |||||||| |||| || ||||| |||||||| ||||||||||||| ||| |||||||| ||||| | |
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| T |
30116359 |
aattgacttgactgaaaatattcaggatccatgtacccaaaagtacctcctactgctgtggttaaatgagtcttatctaatgggattgatctagatgttc |
30116260 |
T |
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| Q |
206 |
caaaatcagataccttggcactaaagttactgtctagtagtatgtttgtgggttttatgtctctgtggaagattggaatagaagccgaaaaatgcatata |
305 |
Q |
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|||||||||| || ||||||||| ||||| ||||||| |||||||| | |||||||||||||| |||||||||||||||||||| || ||||||||||| |
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| T |
30116259 |
caaaatcagacactttggcactatagttattgtctaggagtatgttacttggttttatgtctctatggaagattggaatagaagctgagaaatgcatata |
30116160 |
T |
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| Q |
306 |
tgccactgctccagcaatttcacatgcaattcttaggcggttttcccatgaaaggga |
362 |
Q |
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|| ||||||||| |||| |||||||||||||| ||||| |||||||||||||||| |
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| T |
30116159 |
tgtcactgctccggcaacctcacatgcaattctaaggcgactttcccatgaaaggga |
30116103 |
T |
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