View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8100_high_17 (Length: 383)
Name: NF8100_high_17
Description: NF8100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8100_high_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 2 - 264
Target Start/End: Complemental strand, 52715795 - 52715542
Alignment:
| Q |
2 |
agaaactattattaaataataatgttgtagtaatgtgatggtggagattaattgaaagggacataaacaaaacagatgaatagtttaatacacagttcac |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52715795 |
agaaactattattaaataataatgttgtagtaatgtgatg-tggagattaattaaaagggacataaacaaaacagatgaatagtttaatacacagttcac |
52715697 |
T |
|
| Q |
102 |
catnnnnnnnnnnnnnnnnnnnnnngatgaattcacatcttgtaaaaacggtaacggtttaattaagcagaatgagggaatcatcataattgattaatta |
201 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52715696 |
cataaaaaaaaaaaaaa--------gatgaattcacatcttgtaaaaacggtaacggtttaattaagcagaatgagggaatcatcataattgattaatta |
52715605 |
T |
|
| Q |
202 |
actagtatgatctgtcattttattatgtgttagtttagaacaaacttcaccggagtattgttg |
264 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52715604 |
actagtatgatctgtcgttttattatgtgttagtttagaacaaacttcaccggagtattgttg |
52715542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University