View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8100_high_20 (Length: 366)
Name: NF8100_high_20
Description: NF8100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8100_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 19 - 162
Target Start/End: Original strand, 25340187 - 25340330
Alignment:
| Q |
19 |
aaaatggaggaaaattgttaagtgaagaagagaggacaaatccacaaaatgcagattgcatacattggtgtttgcctggtgttccagatacatggaatca |
118 |
Q |
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| T |
25340187 |
aaaatggaggaaaattgttaagtgaagaagagaggacaaatccacaaaatgcagattgtatacattggtgtttgcctggtgttccagatacatggaatca |
25340286 |
T |
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| Q |
119 |
aatatttttggcaatgttataacaaaatatcttgcacaaaaatc |
162 |
Q |
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| T |
25340287 |
aatatttttggcaatgttataacaaaatatcttgcacaaaaatc |
25340330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 199 - 325
Target Start/End: Original strand, 25340378 - 25340502
Alignment:
| Q |
199 |
gtgacatgaagatgttcactattttacttgtgtacattcatttttcaatactatttgtgtgatatatctaacaaatttttacttgcaaaaccaagggttc |
298 |
Q |
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| T |
25340378 |
gtgacatgaagatgttcactattttatttgtgtacattcatttttcaatactatttgtgtgatatatctaacaaatttttacttgcaaaaccaatggtta |
25340477 |
T |
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| Q |
299 |
attttgctttcgcctgtgtaaaagaag |
325 |
Q |
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| T |
25340478 |
attttac--tcgcctctgtaaaagaag |
25340502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 30 - 136
Target Start/End: Original strand, 5232867 - 5232973
Alignment:
| Q |
30 |
aaattgttaagtgaagaagagaggacaaatccacaaaatgcagattgcatacattggtgtttgcctggtgttccagatacatggaatcaaatatttttgg |
129 |
Q |
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| T |
5232867 |
aaattgttaaatgaagaggaaaggactaatccattgaatgctgattgtatacattggtgtttgcctggtgttcctgatacttggaatcaaatattctttg |
5232966 |
T |
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| Q |
130 |
caatgtt |
136 |
Q |
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| T |
5232967 |
caatgtt |
5232973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 51877588 - 51877539
Alignment:
| Q |
72 |
gattgcatacattggtgtttgcctggtgttccagatacatggaatcaaat |
121 |
Q |
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| T |
51877588 |
gattgcttacactggtgtttgcctggtgttcctgatacatggaatgaaat |
51877539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 4075309 - 4075260
Alignment:
| Q |
67 |
atgcagattgcatacattggtgtttgcctggtgttccagatacatggaat |
116 |
Q |
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| T |
4075309 |
atgcagattgcatacattggtgtctccctggtgtgcctgatacttggaat |
4075260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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