View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8100_high_3 (Length: 578)
Name: NF8100_high_3
Description: NF8100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8100_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 190 - 400
Target Start/End: Original strand, 39179312 - 39179521
Alignment:
| Q |
190 |
gccttactgtctttaggatttagatgacacatgattctgcatacattacattgtagtcttagctcatatgaaaatgggtattaaggcatgctatttttca |
289 |
Q |
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| T |
39179312 |
gccttactgtctttaggatttacaagacacatgattctgcatacattacattgtagtcttagctcatatgaaaatgggtattaaggcatgctatttttca |
39179411 |
T |
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| Q |
290 |
tatttacccgttgcttaaaacctttttgaacaacataaaccatctctttcgtatttaacatttcgacatttatcacagacctgaacatgtaaattaataa |
389 |
Q |
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| T |
39179412 |
tatttacccgttgcttaaaacctttttgaacaagat-aaccatctctttcgtatttaacatttcgacatttatcacagacctgaacatgtaaattaataa |
39179510 |
T |
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| Q |
390 |
ataggaaagaa |
400 |
Q |
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|||||| |||| |
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| T |
39179511 |
ataggagagaa |
39179521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 395 - 567
Target Start/End: Original strand, 39179728 - 39179901
Alignment:
| Q |
395 |
aaagaatttgttcatccagcttaacccaataatgacttacagatggaggagagag--ctctacacttcactatcaataaatttctttacaaaaagttaca |
492 |
Q |
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| T |
39179728 |
aaagaatttgttcatcgagcttaacccaataatgacttacagatggaggagagagagctctacacttcactatcaataaatttctttacaaaaagttaca |
39179827 |
T |
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| Q |
493 |
agaaattaatttcaataaactctccaaaaagcaatgctatcaagtatgatattgtattatgaagatagtgatgat |
567 |
Q |
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| T |
39179828 |
a-aaattaatttcaataaactctccaaaaagcaatgctatcgagtatgatattgtattatgaagatagttatgat |
39179901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 58 - 133
Target Start/End: Original strand, 39179180 - 39179255
Alignment:
| Q |
58 |
tgtttttaaacgttaataacttagtttgtatacactgttagtctaaaataattttatacatgcattaagtcacttg |
133 |
Q |
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| T |
39179180 |
tgtttttaaacgttaataacttagtttgtatacactgttagtctaaaataattttatacatgcattaagtcacttg |
39179255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 482 - 521
Target Start/End: Original strand, 38746810 - 38746849
Alignment:
| Q |
482 |
aaaaagttacaagaaattaatttcaataaactctccaaaa |
521 |
Q |
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| T |
38746810 |
aaaaagttacaagaaattagtttcaataaactctccaaaa |
38746849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 455 - 502
Target Start/End: Complemental strand, 41053403 - 41053358
Alignment:
| Q |
455 |
cacttcactatcaataaatttctttacaaaaagttacaagaaattaat |
502 |
Q |
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| T |
41053403 |
cacttcactatcaa--agtttctttacaaagagttacaagaaattaat |
41053358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 522
Target Start/End: Complemental strand, 32579297 - 32579261
Alignment:
| Q |
486 |
agttacaagaaattaatttcaataaactctccaaaaa |
522 |
Q |
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||||||||||||||| ||||||||| ||||||||||| |
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| T |
32579297 |
agttacaagaaattagtttcaataagctctccaaaaa |
32579261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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