View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8100_high_30 (Length: 301)
Name: NF8100_high_30
Description: NF8100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8100_high_30 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 9 - 288
Target Start/End: Complemental strand, 52140714 - 52140444
Alignment:
| Q |
9 |
actagcctctctgttaatgcattatctttcaatatggcttcttcttcatcttcttcaaccaaagtgacccttaagcttctgtttgacaaaaagcaaaaca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
52140714 |
actagcctctctgttaatgcattatctttcaatatggcttcttcttca---------accaaagtaacccttaagcttctggttgacaaaaagcaaaaca |
52140624 |
T |
|
| Q |
109 |
aagttctattcgctgaagcatccaaagccgccatagactctctcttaaacatgtttcgtttgtcttttggtactgttgtaaggctcatgagaaacaacga |
208 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
52140623 |
aagttctattcgctgaagcatccaaagctgccataaactctctcttaaacatgtttcgcttgtcttttggtactgttgtaaggctcatgagcaacaatga |
52140524 |
T |
|
| Q |
209 |
caagcatttgtttggcagcttaggaaatctatatcatactagtactactctccaaaacctcaaccagaattatgttctct |
288 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
52140523 |
catgcatttgtttggcagcttaggaaatctatatcatactagtactactgtccaaaatctcaaccagaattatgttctct |
52140444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 57 - 289
Target Start/End: Complemental strand, 52131077 - 52130839
Alignment:
| Q |
57 |
tcttcttcaaccaaagtgacccttaagcttctgtttgacaaaaagcaaaacaaagttctattcgctgaagcatccaaagccgccatagactctctcttaa |
156 |
Q |
| |
|
|||||||| |||||| ||||||||||||||| | |||||| |||||||||||||||||| || || |||||||| ||||| ||| ||||||||||||||| |
|
|
| T |
52131077 |
tcttcttccaccaaaatgacccttaagcttccggttgacacaaagcaaaacaaagttctgtttgcagaagcatcaaaagctgccgtagactctctcttaa |
52130978 |
T |
|
| Q |
157 |
acatgtttcgtttgtcttttggtactgttgtaaggctcat---gagaaacaacg---acaagcatttgtttggcagcttaggaaatctatatcatactag |
250 |
Q |
| |
|
||||||||| ||||||||||| || ||| |||||||||| || || |||| ||| ||||||| || |||||||| ||||| |||| ||||| |
|
|
| T |
52130977 |
acatgtttcacttgtcttttggcacagttttaaggctcataagtagcaataacgttaacatgcatttggcgggtagcttaggcaatctgcatcacactag |
52130878 |
T |
|
| Q |
251 |
tactactctccaaaacctcaaccagaattatgttctctc |
289 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
52130877 |
tagtactctccaaaacctcaaccagaattatgttctctc |
52130839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 9 - 288
Target Start/End: Original strand, 17525002 - 17525272
Alignment:
| Q |
9 |
actagcctctctgttaatgcattatctttcaatatggcttcttcttcatcttcttcaaccaaagtgacccttaagcttctgtttgacaaaaagcaaaaca |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||| ||||||||||| |
|
|
| T |
17525002 |
actagcctctctgttaatgcattatctttcaatatggcttctt---------cttcaaccaaagtgacccttaggcttctggttgacacaaagcaaaaca |
17525092 |
T |
|
| Q |
109 |
aagttctattcgctgaagcatccaaagccgccatagactctctcttaaacatgtttcgtttgtcttttggtactgttgtaaggctcatgagaaacaacga |
208 |
Q |
| |
|
||||| | || || ||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
17525093 |
aagttatgtttgccgaatcatcacaagctgccatagactctctcttaaacatgtttcgtttgtcttttggtactgttgtaaggctcatgagctacaacga |
17525192 |
T |
|
| Q |
209 |
caagcatttgtttggcagcttaggaaatctatatcatactagtactactctccaaaacctcaaccagaattatgttctct |
288 |
Q |
| |
|
|| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||| ||||| ||||||| |
|
|
| T |
17525193 |
catgcatttgtttggcagcttaggaaatctgtatcatactagtactactgtccaaaatctcaaccaaaattacgttctct |
17525272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University