View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8100_high_33 (Length: 267)
Name: NF8100_high_33
Description: NF8100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8100_high_33 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 36223193 - 36223441
Alignment:
| Q |
1 |
acataaaaattaatattatgaaaattggcttaggtgtgttctaagagaaggaagcttttaccacaggttgcatacggttcttgccaatagggtattgatc |
100 |
Q |
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| T |
36223193 |
acataaaaattaatattatgaaaattggcttaggtgtgttctaagagaaggaagcttttaccacaggttgcatacggttcttgccaatagggtattgatc |
36223292 |
T |
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| Q |
101 |
atagtttggtttactcatagtatgagaagtgaaccaaagtataaatccagacaagagatccaagagtgagtccaaagttgatgcaatcacagccaaagat |
200 |
Q |
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| T |
36223293 |
atagtttggtttactcatagtatgagaagtgaaccaaagtataaatccagacaagagatccaagagtgagtccaaagttgatgcaatcacagccaaagat |
36223392 |
T |
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| Q |
201 |
ctactttgaattgaagcataaacttttgctacaaatagcaccatgttcc |
249 |
Q |
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| T |
36223393 |
ctactttgaattgaagcataaacttttgctacaaatagcaccatgttcc |
36223441 |
T |
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Back To:
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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 243
Target Start/End: Original strand, 18644946 - 18645061
Alignment:
| Q |
128 |
agtgaaccaaagtataaatccagacaagagatccaagagtgagtccaaagttgatgcaatcacagccaaagatctactttgaattgaagcataaactttt |
227 |
Q |
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| T |
18644946 |
agtgaaccacaatatgaaccccgacaaaagatccaagagagaatccaaggtggaagcaatcacagctaatgatctgctctcaattgatgcatataccttc |
18645045 |
T |
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| Q |
228 |
gctacaaatagcacca |
243 |
Q |
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||| |||||||||||| |
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| T |
18645046 |
gctgcaaatagcacca |
18645061 |
T |
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