View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8100_high_37 (Length: 241)
Name: NF8100_high_37
Description: NF8100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8100_high_37 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 24532076 - 24532299
Alignment:
| Q |
18 |
aagttctatgatcccaaatctaatggagttccatggataccacgtaatgtttctacaggagtaccaatgacttggtacaagaccactttcaagacccctg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24532076 |
aagttctatgatcccaaatctaatggagttccatggataccacgtaatgtttctataggagtaccaatgacttggtacaagaccactttcaagacccctg |
24532175 |
T |
|
| Q |
118 |
aagggtcaaaccttgtagtcctggatttgataggccttcaaagaggaaaagcatgggttaatggtcaatgtattggaaggtatcggcttggtgaaaattc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24532176 |
aagggtcaaaccttgtagtcctggatttgataggccttcaaagaggaaaagcatgggttaatggtcaatgtattggaaggtatcggcttggtgaaaattc |
24532275 |
T |
|
| Q |
218 |
atcttttaggtattacgcagtgcc |
241 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
24532276 |
atcttttaggtattacgcagtgcc |
24532299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 24525404 - 24525627
Alignment:
| Q |
18 |
aagttctatgatcccaaatctaatggagttccatggataccacgtaatgtttctacaggagtaccaatgacttggtacaagaccactttcaagacccctg |
117 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24525404 |
aagttctaagatcccagatctaatggagttccatggataccacgtaatgtttctacaggagtaccaatgacttggtacaagaccactttcaagaccccta |
24525503 |
T |
|
| Q |
118 |
aagggtcaaaccttgtagtcctggatttgataggccttcaaagaggaaaagcatgggttaatggtcaatgtattggaaggtatcggcttggtgaaaattc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
24525504 |
aagggtcaaaccttgtagtcctggatttgataggccttcaaagaggaaaagcatgggttaatggtcaaagtattggaaggtatcagcttggtgaaaattc |
24525603 |
T |
|
| Q |
218 |
atcttttaggtattacgcagtgcc |
241 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
24525604 |
atcttttaggtattacgcagtgcc |
24525627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 290349 - 290575
Alignment:
| Q |
18 |
aagttctatgatcccaaatcta---atggagttccatggataccacgtaatgtttctacaggagtaccaatgacttggtacaagaccactttcaagaccc |
114 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||| | ||||||||||||||| || || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
290349 |
aagttctatgatcccaaatctaccaatgtagttccatggcaaacacgtaatgtttctatagaaggaccaatgacttggtacaagaccactttcaagaccc |
290448 |
T |
|
| Q |
115 |
ctgaagggtcaaaccttgtagtcctggatttgataggccttcaaagaggaaaagcatgggttaatggtcaatgtattggaaggtatcggcttggtgaaaa |
214 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||| ||||||||| || |||||||||| |
|
|
| T |
290449 |
ctgaaggttcaaaccttgtagtcctggatttgataggtcttcaaagaggaaaagcatgggttaacggtcaaagtatcggaaggtattggattggtgaaaa |
290548 |
T |
|
| Q |
215 |
ttcatcttttaggtattacgcagtgcc |
241 |
Q |
| |
|
|||||||||||||| |||||||||||| |
|
|
| T |
290549 |
ttcatcttttaggttttacgcagtgcc |
290575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 41 - 200
Target Start/End: Original strand, 279930 - 280089
Alignment:
| Q |
41 |
tggagttccatggataccacgtaatgtttctacaggagtaccaatgacttggtacaagaccactttcaagacccctgaagggtcaaaccttgtagtcctg |
140 |
Q |
| |
|
|||||||| ||||| | || ||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||| || |||||| |||||| || |
|
|
| T |
279930 |
tggagttcaatggaaaacaaataatgtttctataggagtaccaatgacttggtataagactactttcaagacccctgatggtacaaaccccgtagtcttg |
280029 |
T |
|
| Q |
141 |
gatttgataggccttcaaagaggaaaagcatgggttaatggtcaatgtattggaaggtat |
200 |
Q |
| |
|
|| |||||||||||||| | |||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
280030 |
gacttgataggccttcagaaaggagaagcatgggttaatggtcaaagtattggaaggtat |
280089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University