View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8100_high_4 (Length: 544)
Name: NF8100_high_4
Description: NF8100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8100_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Original strand, 39167111 - 39167637
Alignment:
| Q |
1 |
aaaaaacatgtgaattcaattaccgactagtgttcttttgattacagttttggcttttattttgcctgaaacagagaaagtatgaaacagatacatgcct |
100 |
Q |
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| T |
39167111 |
aaaaaacatgtgaattcaattaccgactagtgttcttttgattacagttttggcttttattttgcctgaaacagagaaagtatgaaacagatacatgcct |
39167210 |
T |
|
| Q |
101 |
tgttaaaaggctcgggtttagggtgtagccttatatgcgagttagcaagaagcagaatcaaatgctctctttgattcctcacgctgtccttctgtactca |
200 |
Q |
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| T |
39167211 |
tgttaaaaggctcgggtttagggtgtagccttatatgcgagttagcaagaagcagaatcaaatgctctctttgattcctcacgctgtccttctgtactca |
39167310 |
T |
|
| Q |
201 |
aataaaccagatacataaacaattgatggaggccatacaaaaatttggtcaacaataaatctttttcttccatattctgtgtacgaaatacatacctgga |
300 |
Q |
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| T |
39167311 |
aataaaccagatacataaacaattgatggaggccatacaaaaatttggtcaacaataaatctttttcttccatattctgtgtacgaaatacatacctgga |
39167410 |
T |
|
| Q |
301 |
agccaaatattgctctaagccaatcaagcatgtccaaatctccggttctctgcctctgttgctcaaatgagccaggccagttcaagccacgagtgttcca |
400 |
Q |
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| T |
39167411 |
agccaaatattgctctaagccaatcaagcatgtccaaatctccggttctctgcctctgttgctcaaatgagccaggccagttcaagccacgagtgttcca |
39167510 |
T |
|
| Q |
401 |
gagcgcagaaacagcagccttaatctaatagcaaaagaaagcagttcaaactcatactatgtccggttaaagaaacgcaaggatttaacattagtcactc |
500 |
Q |
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| T |
39167511 |
gagcgcagaaacagcagccttaatctaatagcaaaagaaagcagttcaaactcatactatgtccagttaaagaaacgcaaggatttaacattagtcactc |
39167610 |
T |
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| Q |
501 |
aaaaacacctcttcaaactgcataatg |
527 |
Q |
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| T |
39167611 |
aaaaacacctcttcaaactgcataatg |
39167637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 290 - 427
Target Start/End: Original strand, 43964907 - 43965044
Alignment:
| Q |
290 |
acatacctggaagccaaatattgctctaagccaatcaagcatgtccaaatctccggttctctgcctctgttgctcaaatgagccaggccagttcaagcca |
389 |
Q |
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|||| ||||||| ||||| || ||||| ||||||||||||| ||||||||||| |||||||| | |||||| |||| | |||||||||||||||| |
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| T |
43964907 |
acatgcctggaacccaaacatggctctgagccaatcaagcagatccaaatctccagttctctggcgagtttgctcgaatgcactaggccagttcaagcca |
43965006 |
T |
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| Q |
390 |
cgagtgttccagagcgcagaaacagcagccttaatcta |
427 |
Q |
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| T |
43965007 |
cgagtattaaaaagcgcagaaacagctgccttaatcta |
43965044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 98 - 179
Target Start/End: Original strand, 43964704 - 43964785
Alignment:
| Q |
98 |
ccttgttaaaaggctcgggtttagggtgtagccttatatgcgagttagcaagaagcagaatcaaatgctctctttgattcct |
179 |
Q |
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||||||| | |||||||||||| ||||||||||||||||| |||||||||||||| ||| | ||||||||| |||||||| |
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| T |
43964704 |
ccttgttgagaggctcgggtttggggtgtagccttatatggttgttagcaagaagcaaaattagatgctctctctgattcct |
43964785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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