View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8100_high_41 (Length: 238)
Name: NF8100_high_41
Description: NF8100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8100_high_41 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 613670 - 613892
Alignment:
| Q |
1 |
attaaagtatttattaattaagaaattcaaaagaaattttttatcttctaaacgatgcatttaacattttgaaacttgaaatcgacttatcctatataaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
613670 |
attaaagtatttattaattaagaaattcaaaagaaaatttttatcttctaaacgatgcatttaacattttgaaacttgaaatcgacttttcctatataaa |
613769 |
T |
|
| Q |
101 |
ttttaacttggaaatgatattttttgtatgaccctttttatagcaannnnnnnnnatacaaataaacttttgtgtgttcacaagattttttatagaagat |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
613770 |
ttttaacttggaaatgatattttttgcatgaccctttttatagcaatttttttttatacaaataaacttttgtgtgttcacaagattttttatagaagat |
613869 |
T |
|
| Q |
201 |
ttaaacacactcgtaaaaataat |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
613870 |
ttaaacacactcgtaaaaataat |
613892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University