View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8100_high_42 (Length: 238)
Name: NF8100_high_42
Description: NF8100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8100_high_42 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 15 - 210
Target Start/End: Original strand, 51611380 - 51611573
Alignment:
| Q |
15 |
agttggttcatttgatttgactgtttagtgttttgactagcacctaaactgggagaattagatttttaaaaatatataagcatccaacaacatctgttat |
114 |
Q |
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| T |
51611380 |
agttggttcatttgatttgactgtttagtgttttgactagcacctaaactgggagaattagatttt--aaaaaatataagcatccaacaacatctgttat |
51611477 |
T |
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| Q |
115 |
aacctggtgtaccactttcagttggtgcatgctatannnnnnnngagtttttcatgcgtaattgcataactaactccttcaaacagcgatattctt |
210 |
Q |
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|||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
51611478 |
aacctggtgtaccactttcagttggtacatgctatattttttttgagtttttcatgcgcaattgcataactaactccttcaaacagcgattttctt |
51611573 |
T |
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