View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8100_high_44 (Length: 230)
Name: NF8100_high_44
Description: NF8100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8100_high_44 |
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| [»] chr2 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 24532508 - 24532279
Alignment:
| Q |
1 |
tttgcatagacataatggtgtcatcatttattggttatgaatttatgtatttttgtataaatattcatgatgagcaaccttgatcccacttaacaaaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24532508 |
tttgcatagacataatggtgtcatcatttattggttatgaatttatgtatttctgtataaatattcatgatgagcaaccttgatcccacttaacaaaatt |
24532409 |
T |
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| Q |
101 |
tctggattcgatgctgattatgtcgacagacacattgaaagggccatcacccagacccaattcctcaaacaagaccaatgtgtttacatctttattaaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24532408 |
tctggattcgatgctgattatgtcgacagacacattgaaagggcctttacccagacccaattcctcaaacaagaccaatgtgtttacatctttattaaag |
24532309 |
T |
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| Q |
201 |
aatggccttggcactgcgtaatacctaaaa |
230 |
Q |
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| T |
24532308 |
aatggccttggcactgcgtaatacctaaaa |
24532279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 24525837 - 24525607
Alignment:
| Q |
1 |
tttgcatagacataatggtgtcatcatttattggttatgaatttatgtat-ttttgtataaatattcatgatgagcaaccttgatcccacttaacaaaat |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24525837 |
tttgcatagacataatggtgtcatcatttattggttatgaatttatgtatattttttataaatattcatgatgagcaaccttgatcccacttaacaaaat |
24525738 |
T |
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| Q |
100 |
ttctggattcgatgctgattatgtcgacagacacattgaaagggccatcacccagacccaattcctcaaacaagaccaatgtgtttacatctttattaaa |
199 |
Q |
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| T |
24525737 |
ttctggattcgatgctgattatgtcgacagacacattgaaagggccttcacccagacccaattcctcaaacaagaccaatgtgtttacatctttattaaa |
24525638 |
T |
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| Q |
200 |
gaatggccttggcactgcgtaatacctaaaa |
230 |
Q |
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| T |
24525637 |
gaatggccttggcactgcgtaatacctaaaa |
24525607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 12 - 230
Target Start/End: Complemental strand, 290774 - 290555
Alignment:
| Q |
12 |
ataatggtgtcatcattt-attggttatgaatttatgtatttttgtataaatattcatgatgagcaaccttgatcccacttaacaaaatttctggattcg |
110 |
Q |
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|||| ||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||| |
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| T |
290774 |
ataacggtgtcatcattttattggttataaatttatatatttttgtataaatattcatgatatgcaaccttgatcccacttaacgaaatttttggattcg |
290675 |
T |
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| Q |
111 |
atgctgattatgtcgacagacacattgaaagggccatcacccagacccaattcctcaaacaagaccaatgtgtttacatctttattaaagaatggccttg |
210 |
Q |
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|||| | ||||||||||||||||||||||||||| ||||| ||||||| || |||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
290674 |
ttgctaactatgtcgacagacacattgaaagggccttcacctagacccagctcttcaaacaagaccaacgtgtttacatctttatttaagaatggccttg |
290575 |
T |
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| Q |
211 |
gcactgcgtaatacctaaaa |
230 |
Q |
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| T |
290574 |
gcactgcgtaaaacctaaaa |
290555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 280266 - 280207
Alignment:
| Q |
155 |
acccaattcctcaaacaagaccaatgtgtttacatctttattaaagaatggccttggcac |
214 |
Q |
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| T |
280266 |
acccatttcctcaaacaaaaccaacgtgtttacatcattatttaagaatgaccttggcac |
280207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 6015796 - 6015876
Alignment:
| Q |
27 |
tttattggttatgaatttatgtatttttgtataaatattcatgatgagcaaccttgatcccacttaacaaaatttctggat |
107 |
Q |
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| T |
6015796 |
tttattggttataaatttatatatttttgtataaatatttatgataaacaattttgaccccacttattgaaatttctggat |
6015876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 12252528 - 12252608
Alignment:
| Q |
27 |
tttattggttatgaatttatgtatttttgtataaatattcatgatgagcaaccttgatcccacttaacaaaatttctggat |
107 |
Q |
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| T |
12252528 |
tttattggttataaatttatatatttttgtataaatatttatgataaacaattttgaccccacttattgaaatttctggat |
12252608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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