View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8100_high_45 (Length: 230)
Name: NF8100_high_45
Description: NF8100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8100_high_45 |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 3 - 230
Target Start/End: Complemental strand, 5832156 - 5831929
Alignment:
| Q |
3 |
atgtgatttattgggaacttttgatgaagggttcatctcatcctccaacaaatgaagtattgaatcaatgttgtttggttatggaagagtgtttgaattc |
102 |
Q |
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| T |
5832156 |
atgttatttattgggagcttttgatgaaggattcctcttgtcctccaactgatgaagtgttgaatcaatgttgtttggttatggaagagtctttgaattc |
5832057 |
T |
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| Q |
103 |
tgtttatagacaaggaagagttgctgataattcaattgggccattagagatttgtgtggtgaaaaatggcacgtttgaggaactaatggattatgcaata |
202 |
Q |
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| T |
5832056 |
tgtttatagacaaggaagagttgctgataattcaattgggccattagagattcgtgtggtgaaaaatggcacgtttgaggaactaatggattatgcaata |
5831957 |
T |
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| Q |
203 |
tcgcgtggtgcaagtatcaatcagtata |
230 |
Q |
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| T |
5831956 |
tcgcgtggtgcaagtatcaatcagtata |
5831929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 3 - 214
Target Start/End: Original strand, 5823883 - 5824094
Alignment:
| Q |
3 |
atgtgatttattgggaacttttgatgaagggttcatctcatcctccaacaaatgaagtattgaatcaatgttgtttggttatggaagagtgtttgaattc |
102 |
Q |
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| T |
5823883 |
atgttatttattgggagcttttgatgaaggattcctcttgtcctccaactgatgaagtgttgaatcaatgttgtttggttatggaagagtctttgaattc |
5823982 |
T |
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| Q |
103 |
tgtttatagacaaggaagagttgctgataattcaattgggccattagagatttgtgtggtgaaaaatggcacgtttgaggaactaatggattatgcaata |
202 |
Q |
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| T |
5823983 |
tgtttatagacaaggaagagttgctgataattcaattgggccattagagattcgtgtggtgaaaaatggcacattcgaggatttgatggattattatata |
5824082 |
T |
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| Q |
203 |
tcgcgtggtgca |
214 |
Q |
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| T |
5824083 |
tcgtgtggtgca |
5824094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 201
Target Start/End: Original strand, 78736 - 78842
Alignment:
| Q |
95 |
ttgaattctgtttatagacaaggaagagttgctgataattcaattgggccattagagatttgtgtggtgaaaaatggcacgtttgaggaactaatggatt |
194 |
Q |
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| T |
78736 |
ttgaattctgtttataggcaatgtagggttgctgatcattcaattggaccattggagataagggttgtgaagagtggaacttttgaggagcttatggatt |
78835 |
T |
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| Q |
195 |
atgcaat |
201 |
Q |
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| T |
78836 |
atgcaat |
78842 |
T |
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