View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8100_high_51 (Length: 202)

Name: NF8100_high_51
Description: NF8100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8100_high_51
NF8100_high_51
[»] chr5 (8 HSPs)
chr5 (1-194)||(42740889-42741083)
chr5 (1-196)||(21745034-21745230)
chr5 (1-46)||(3173849-3173894)
chr5 (1-45)||(18740037-18740081)
chr5 (2-45)||(43299937-43299980)
chr5 (1-45)||(32863333-32863378)
chr5 (1-32)||(26063055-26063086)
chr5 (166-198)||(19837719-19837751)
[»] chr7 (11 HSPs)
chr7 (46-196)||(27601954-27602104)
chr7 (1-51)||(25533957-25534006)
chr7 (1-45)||(21453182-21453227)
chr7 (3-46)||(42004879-42004922)
chr7 (1-45)||(12003332-12003377)
chr7 (1-45)||(31418966-31419011)
chr7 (1-45)||(21358376-21358419)
chr7 (8-45)||(6472697-6472735)
chr7 (8-46)||(18886296-18886334)
chr7 (2-44)||(44660056-44660097)
chr7 (102-143)||(2820756-2820797)
[»] chr3 (5 HSPs)
chr3 (46-196)||(28308447-28308596)
chr3 (1-47)||(2339180-2339227)
chr3 (1-45)||(52893141-52893186)
chr3 (3-44)||(9456119-9456161)
chr3 (1-32)||(40922562-40922593)
[»] chr6 (4 HSPs)
chr6 (1-45)||(14125099-14125143)
chr6 (1-45)||(16497561-16497606)
chr6 (1-32)||(7170730-7170761)
chr6 (75-144)||(10389021-10389090)
[»] chr4 (8 HSPs)
chr4 (1-45)||(8433372-8433416)
chr4 (1-45)||(14800359-14800404)
chr4 (1-45)||(23218586-23218628)
chr4 (5-45)||(46164756-46164797)
chr4 (1-32)||(21421933-21421964)
chr4 (1-32)||(33754315-33754346)
chr4 (1-46)||(44504332-44504378)
chr4 (1-31)||(47825605-47825635)
[»] chr1 (7 HSPs)
chr1 (1-45)||(26354696-26354740)
chr1 (2-43)||(324368-324409)
chr1 (4-44)||(48183914-48183953)
chr1 (1-32)||(18994628-18994659)
chr1 (1-32)||(26014229-26014260)
chr1 (1-45)||(3288475-3288519)
chr1 (78-114)||(30626332-30626368)
[»] chr8 (8 HSPs)
chr8 (1-46)||(1667822-1667868)
chr8 (1-46)||(32381197-32381242)
chr8 (1-46)||(32435152-32435197)
chr8 (1-46)||(16658527-16658573)
chr8 (1-46)||(33360100-33360146)
chr8 (8-44)||(775081-775117)
chr8 (8-44)||(780735-780771)
chr8 (3-47)||(43915826-43915869)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-45)||(39323-39368)
[»] chr2 (2 HSPs)
chr2 (1-45)||(19319364-19319408)
chr2 (1-45)||(25697956-25697998)
[»] scaffold1160 (1 HSPs)
scaffold1160 (1-42)||(2168-2210)


Alignment Details
Target: chr5 (Bit Score: 171; Significance: 5e-92; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 42740889 - 42741083
Alignment:
Q  1 tggggtggcggtggctcccccttgccacccc-cagttccgccactgctccacatccggacatgcaaagttgtgactcatgagacataatgttgcacgcca 99  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||    
T  42740889 tggggtggcggtggctcccccttgccaccccccagttccgccactgctccacatctggacatgcaaagttgtgactcatgaaacataatgctgcacgcca 42740988  T
Q  100 ttaaattatcctttgactgcaacctatttcgaagaagtcttcaagctagcatagaaactttcttgaaaacatgtttgtgccaaattaaatctgaa 194  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42740989 ttaaattatcctttgacagcaacctatttcgaagaagtcttcaagctagcatagaaactttcttgaaaacatgtttgtgccaaattaaatctgaa 42741083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 21745034 - 21745230
Alignment:
Q  1 tggggtggcggtggctcccccttgccacccc-cagttccgccactgctccacatccggacatgcaaagttgtgactcatgagacataatgttgcacgcca 99  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||  ||||||||    
T  21745034 tggggtggcggtggctcccccttgccaccccccagttccgccactgctccatatccagacatgcaaagttgtgactcatgagatataatgccgcacgcca 21745133  T
Q  100 ttaaattatcctttgactgcaacctatttcgaagaagtcttcaagctagcatagaaactttcttgaaaacatgtttgtgccaaattaaatctgaagt 196  Q
    | |||||||||||||||  |||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21745134 tcaaattatcctttgacaacaacctattttgaagaagtctccaaactagcatagaaactttcttgaaaacatgtttgtgccaaattaaatctgaagt 21745230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 3173894 - 3173849
Alignment:
Q  1 tggggtggcggtggctcccccttgccacccccagttccgccactgc 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  3173894 tggggtggcggtggctcccccttgccacccccagttccgccactgc 3173849  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 18740037 - 18740081
Alignment:
Q  1 tggggtggcggtggctcccccttgccacccccagttccgccactg 45  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  18740037 tggggtggcggtggctcccccttgccaaccccagttccgccactg 18740081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 43299980 - 43299937
Alignment:
Q  2 ggggtggcggtggctcccccttgccacccccagttccgccactg 45  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  43299980 ggggtggcggtggctcccccttgccaaccccagttccgccactg 43299937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 32863378 - 32863333
Alignment:
Q  1 tggggtggcggtggctcccccttgccac-ccccagttccgccactg 45  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  32863378 tggggtggcggtggctcccccttgccaccccccagttccgccactg 32863333  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 26063086 - 26063055
Alignment:
Q  1 tggggtggcggtggctcccccttgccaccccc 32  Q
    ||||||||||||||||||||||||||||||||    
T  26063086 tggggtggcggtggctcccccttgccaccccc 26063055  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 19837719 - 19837751
Alignment:
Q  166 aaacatgtttgtgccaaattaaatctgaagttg 198  Q
    |||| ||||||||||||||||||||||||||||    
T  19837719 aaacctgtttgtgccaaattaaatctgaagttg 19837751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 1e-27; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 46 - 196
Target Start/End: Complemental strand, 27602104 - 27601954
Alignment:
Q  46 ctccacatccggacatgcaaagttgtgactcatgagacataatgttgcacgccattaaattatcctttgactgcaacctatttcgaagaagtcttcaagc 145  Q
    ||||||||||||||| |||||| | |||||  ||| | ||||||| || ||||| |||||||||| |||||  ||||||||||||||||| ||| |||||    
T  27602104 ctccacatccggacacgcaaagctatgacttgtgaaatataatgtcgcgcgccactaaattatcccttgacgacaacctatttcgaagaactctccaagc 27602005  T
Q  146 tagcatagaaactttcttgaaaacatgtttgtgccaaattaaatctgaagt 196  Q
     || |||||||| |||  | |||| ||||||||||||||||||||||||||    
T  27602004 aagaatagaaaccttcaaggaaacctgtttgtgccaaattaaatctgaagt 27601954  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 25534006 - 25533957
Alignment:
Q  1 tggggtggcggtggctcccccttgccacccccagttccgccactgctccac 51  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  25534006 tggggtggcggtggctcccccttgcca-ccccagttccgccactgcaccac 25533957  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 21453182 - 21453227
Alignment:
Q  1 tggggtggcggtggctcccccttgcca-cccccagttccgccactg 45  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  21453182 tggggtggcggtggctcccccttgccaccccccagttccgccactg 21453227  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 42004922 - 42004879
Alignment:
Q  3 gggtggcggtggctcccccttgccacccccagttccgccactgc 46  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||    
T  42004922 gggtggcagtggctcccccttaccacccccagttccgccactgc 42004879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 12003332 - 12003377
Alignment:
Q  1 tggggtggcggtggctcccccttgcca-cccccagttccgccactg 45  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||    
T  12003332 tggggtggcggtggctcctccttgccaccccccagttccgccactg 12003377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 31419011 - 31418966
Alignment:
Q  1 tggggtggcggtggctcccccttgccac-ccccagttccgccactg 45  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||    
T  31419011 tggggtggcggtggctcccccttgccaccccccggttccgccactg 31418966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 21358376 - 21358419
Alignment:
Q  1 tggggtggcggtggctcccccttgccacccccagttccgccactg 45  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||    
T  21358376 tggggtggcggtggctcccccttacca-ccccagttccgccactg 21358419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 6472697 - 6472735
Alignment:
Q  8 gcggtggctcccccttgcca-cccccagttccgccactg 45  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  6472697 gcggtggctcccccttgccaccccccagttccgccactg 6472735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 18886334 - 18886296
Alignment:
Q  8 gcggtggctcccccttgccacccccagttccgccactgc 46  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  18886334 gcggtcgctcccccttgccaccctcagttccgccactgc 18886296  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 44660097 - 44660056
Alignment:
Q  2 ggggtggcggtggctcccccttgccacccccagttccgccact 44  Q
    |||||||||||||||||||||||||| ||||||||||| ||||    
T  44660097 ggggtggcggtggctcccccttgcca-ccccagttccggcact 44660056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 102 - 143
Target Start/End: Complemental strand, 2820797 - 2820756
Alignment:
Q  102 aaattatcctttgactgcaacctatttcgaagaagtcttcaa 143  Q
    ||||||||||||||  |||||| |||||||||||||||||||    
T  2820797 aaattatcctttgatggcaaccaatttcgaagaagtcttcaa 2820756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 8e-23; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 46 - 196
Target Start/End: Original strand, 28308447 - 28308596
Alignment:
Q  46 ctccacatccggacatgcaaagttgtgactcatgagacataatgttgcacgccattaaattatcctttgactgcaacctatttcgaagaagtcttcaagc 145  Q
    ||||||||||||||| ||||||||||||||  | ||| |||||||  |  ||||  ||||||||||||||| |||||||||| |||||||||||||||||    
T  28308447 ctccacatccggacacgcaaagttgtgacttgt-agatataatgtcacgtgccaccaaattatcctttgacagcaacctattccgaagaagtcttcaagc 28308545  T
Q  146 tagcatagaaactttcttgaaaacatgtttgtgccaaattaaatctgaagt 196  Q
     || |||||||| |||  |  ||| || |||||||||||| ||||||||||    
T  28308546 aagaatagaaaccttcaagggaacctgcttgtgccaaattcaatctgaagt 28308596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 2339180 - 2339227
Alignment:
Q  1 tggggtggcggtggctcccccttgcca-cccccagttccgccactgct 47  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2339180 tggggtggcggtggctcccccttgccaccccccagttccgccactgct 2339227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 52893186 - 52893141
Alignment:
Q  1 tggggtggcggtggctcccccttgcc-acccccagttccgccactg 45  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  52893186 tggggtggcggtggctcccccttgccaacccccagttccgccactg 52893141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 9456161 - 9456119
Alignment:
Q  3 gggtggcggtggctcccccttgccac-ccccagttccgccact 44  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  9456161 gggtggcggtggctcccccttgccaccccccagttccgccact 9456119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 40922593 - 40922562
Alignment:
Q  1 tggggtggcggtggctcccccttgccaccccc 32  Q
    ||||||||||||||||||||||||||||||||    
T  40922593 tggggtggcggtggctcccccttgccaccccc 40922562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 14125099 - 14125143
Alignment:
Q  1 tggggtggcggtggctcccccttgccacccccagttccgccactg 45  Q
    |||||| ||||||||||||||||||||||||||||||||||||||    
T  14125099 tggggtagcggtggctcccccttgccacccccagttccgccactg 14125143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 16497561 - 16497606
Alignment:
Q  1 tggggtggcggtggctcccccttgccacccc-cagttccgccactg 45  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  16497561 tggggtggcggtggctcccccttgccaccccgcagttccgccactg 16497606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 7170761 - 7170730
Alignment:
Q  1 tggggtggcggtggctcccccttgccaccccc 32  Q
    ||||||||||||||||||||||||||||||||    
T  7170761 tggggtggcggtggctcccccttgccaccccc 7170730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 144
Target Start/End: Complemental strand, 10389090 - 10389021
Alignment:
Q  75 tcatgagacataatgttgcacgccattaaattatcctttgactgcaacctatttcgaagaagtcttcaag 144  Q
    |||||||| |||||||||| |||||  |||||| |||||||| | | |||||| ||||||||||| ||||    
T  10389090 tcatgagagataatgttgcgcgccaccaaattaccctttgacggtagcctattccgaagaagtctccaag 10389021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 8433372 - 8433416
Alignment:
Q  1 tggggtggcggtggctcccccttgccacccccagttccgccactg 45  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  8433372 tggggtggcggtggctcccccttgccacccccggttccgccactg 8433416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 14800359 - 14800404
Alignment:
Q  1 tggggtggcggtggctcccccttgccaccccc-agttccgccactg 45  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||    
T  14800359 tggggtggctgtggctcccccttgccaccccctagttccgccactg 14800404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 23218586 - 23218628
Alignment:
Q  1 tggggtggcggtggctcccccttgccacccccagttccgccactg 45  Q
    ||||||||||||||||||||  |||||||||||||||||||||||    
T  23218586 tggggtggcggtggctcccc--tgccacccccagttccgccactg 23218628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 46164756 - 46164797
Alignment:
Q  5 gtggcggtggctcccccttgccacc-cccagttccgccactg 45  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  46164756 gtggcggtggctcccccttgccaccacccagttccgccactg 46164797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 21421964 - 21421933
Alignment:
Q  1 tggggtggcggtggctcccccttgccaccccc 32  Q
    ||||||||||||||||||||||||||||||||    
T  21421964 tggggtggcggtggctcccccttgccaccccc 21421933  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 33754315 - 33754346
Alignment:
Q  1 tggggtggcggtggctcccccttgccaccccc 32  Q
    ||||||||||||||||||||||||||||||||    
T  33754315 tggggtggcggtggctcccccttgccaccccc 33754346  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 44504378 - 44504332
Alignment:
Q  1 tggggtggcggtggctcccccttgcc-acccccagttccgccactgc 46  Q
    |||||||||||||||||||||||||| ||||| ||||||||| ||||    
T  44504378 tggggtggcggtggctcccccttgccaacccctagttccgcccctgc 44504332  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 47825635 - 47825605
Alignment:
Q  1 tggggtggcggtggctcccccttgccacccc 31  Q
    |||||||||||||||||||||||||||||||    
T  47825635 tggggtggcggtggctcccccttgccacccc 47825605  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 26354740 - 26354696
Alignment:
Q  1 tggggtggcggtggctcccccttgccacccccagttccgccactg 45  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  26354740 tggggtggcggtggctcccccttgccacctccagttccgccactg 26354696  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 324409 - 324368
Alignment:
Q  2 ggggtggcggtggctcccccttgccacccccagttccgccac 43  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  324409 ggggtggcggtggctcccccttgccacccccagatccgccac 324368  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 48183953 - 48183914
Alignment:
Q  4 ggtggcggtggctcccccttgccacccccagttccgccact 44  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  48183953 ggtggcggtggctcccccttgcca-ccccagttccgccact 48183914  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 18994628 - 18994659
Alignment:
Q  1 tggggtggcggtggctcccccttgccaccccc 32  Q
    ||||||||||||||||||||||||||||||||    
T  18994628 tggggtggcggtggctcccccttgccaccccc 18994659  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 26014260 - 26014229
Alignment:
Q  1 tggggtggcggtggctcccccttgccaccccc 32  Q
    ||||||||||||||||||||||||||||||||    
T  26014260 tggggtggcggtggctcccccttgccaccccc 26014229  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 3288475 - 3288519
Alignment:
Q  1 tggggtggcggtggctcccccttgccacccccagttccgccactg 45  Q
    ||||||||| |||||||||||||| || |||| ||||||||||||    
T  3288475 tggggtggccgtggctcccccttgtcaaccccggttccgccactg 3288519  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 114
Target Start/End: Original strand, 30626332 - 30626368
Alignment:
Q  78 tgagacataatgttgcacgccattaaattatcctttg 114  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  30626332 tgagaaataatgttgcacgccattagattatcctttg 30626368  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 1667868 - 1667822
Alignment:
Q  1 tggggtggcggtggctcccccttgccac-ccccagttccgccactgc 46  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||    
T  1667868 tggggtggcggtggctcccccttgccaccccccagttccgccactgc 1667822  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 32381242 - 32381197
Alignment:
Q  1 tggggtggcggtggctcccccttgccacccccagttccgccactgc 46  Q
    |||||||||||||||||||||||||||||||| | |||||||||||    
T  32381242 tggggtggcggtggctcccccttgccacccccggctccgccactgc 32381197  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 32435197 - 32435152
Alignment:
Q  1 tggggtggcggtggctcccccttgccacccccagttccgccactgc 46  Q
    |||||||||||||||||||||||||||||||| | |||||||||||    
T  32435197 tggggtggcggtggctcccccttgccacccccggctccgccactgc 32435152  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 16658573 - 16658527
Alignment:
Q  1 tggggtggcggtggctcccccttgccac-ccccagttccgccactgc 46  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||    
T  16658573 tggggtggcggtgtctcccccttgccaccccccagttccgccactgc 16658527  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 33360146 - 33360100
Alignment:
Q  1 tggggtggcggtggctcccccttgccaccccc-agttccgccactgc 46  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||    
T  33360146 tggggtggcggtggctcccccttgccaccccctaattccgccactgc 33360100  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 775081 - 775117
Alignment:
Q  8 gcggtggctcccccttgccacccccagttccgccact 44  Q
    |||||||||| |||||||||||| |||||||||||||    
T  775081 gcggtggctcgcccttgccacccgcagttccgccact 775117  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 780735 - 780771
Alignment:
Q  8 gcggtggctcccccttgccacccccagttccgccact 44  Q
    |||||||||| |||||||||||| |||||||||||||    
T  780735 gcggtggctcgcccttgccacccgcagttccgccact 780771  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 43915869 - 43915826
Alignment:
Q  3 gggtggcggtggctcccccttgccacccccagttccgccactgct 47  Q
    |||||||||||||||| |||||||| ||||||||| |||||||||    
T  43915869 gggtggcggtggctcctccttgcca-ccccagttcagccactgct 43915826  T

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Target: scaffold0005 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 39368 - 39323
Alignment:
Q  1 tggggtggcggtggctcccccttgccaccccc-agttccgccactg 45  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||    
T  39368 tggggtggctgtggctcccccttgccaccccctagttccgccactg 39323  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 19319364 - 19319408
Alignment:
Q  1 tggggtggcggtggctcccccttgccacccccagttccgccactg 45  Q
    ||||||||||||||||| ||||||||| || ||||||||||||||    
T  19319364 tggggtggcggtggctctcccttgccaacctcagttccgccactg 19319408  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 25697956 - 25697998
Alignment:
Q  1 tggggtggcggtggctcccccttgccacccccagttccgccactg 45  Q
    |||||||||| |||||||||||||||| |||||||||||||||||    
T  25697956 tggggtggcg-tggctcccccttgcca-ccccagttccgccactg 25697998  T

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Target: scaffold1160 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1160
Description:

Target: scaffold1160; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 2210 - 2168
Alignment:
Q  1 tggggtggcggtggctcccccttgccaccccc-agttccgcca 42  Q
    ||||||||||||||||||||||| |||||||| ||||||||||    
T  2210 tggggtggcggtggctcccccttaccaccccctagttccgcca 2168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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