View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8100_high_7 (Length: 467)
Name: NF8100_high_7
Description: NF8100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8100_high_7 |
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| [»] chr1 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Complemental strand, 4776254 - 4775784
Alignment:
| Q |
1 |
ccgactccacatactgtgacagtaaggaatttcgcagtatacttggtgccttacactacctttcaatcactcgcccagacatagcatttccagtgaataa |
100 |
Q |
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| T |
4776254 |
ccgactccacatactgtgacagtaaggaatttcgcagtatgcttggtgccttacactacctttcaatcactcgcccagacattgcatttccagtgaataa |
4776155 |
T |
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| Q |
101 |
actagcataacaaatgcaagctcctactgtgacagatatgcaagccttgaagagagtattgcgctatctcaaatccaccatctccaatggactccatctc |
200 |
Q |
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| T |
4776154 |
actagcataacaaatgcaagctcctactgtgacagatatgcaagccttgaagagagtattgcgctatctcaaatccaccatctccaatggactccatctc |
4776055 |
T |
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| Q |
201 |
acaagatcttcaaatacaagcctcacaagcttttgtgatgcagattgggcaggagacacaattgacagga----aacaggtgcttatttaatttatattg |
296 |
Q |
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| T |
4776054 |
acaagatcttcaaatacaaacctcacaagcttttgtgatgcagattaggcaggagacacaattgacaggaaatcaacaggtgcttatttaatttattttg |
4775955 |
T |
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| Q |
297 |
gccctaatattatctcttggtcatgcaagaagcaaccaacaattgcaaaatcgtcaactgaagctgaatatcgtactatagcagccactactcaagaatt |
396 |
Q |
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| T |
4775954 |
gccctaatattatctcttggtcatgcaagaagcaaccaacaattgcaaaatcgtcaactgaagctgaatatcgtactatagcagccactactcaagaatt |
4775855 |
T |
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| Q |
397 |
aatatgggttcaaaacttgttacaagaacttcaaattccattaacggcaccaacaatattcttagaaaaca |
467 |
Q |
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| T |
4775854 |
aatatgggttcaaaacttgttacaagaacttcaaattccattaactgcaccaacaatattctaagacaaca |
4775784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 216 - 467
Target Start/End: Complemental strand, 43061400 - 43061145
Alignment:
| Q |
216 |
acaagcctcacaagcttttgtgatgcagattgggcaggagacacaattgacagga----aacaggtgcttatttaatttatattggccctaatattatct |
311 |
Q |
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| T |
43061400 |
acaagcctcacaaacttttgtgatgcagattgggcaggagacacaattgacaggatatgaacaggtgcttatttcatttattttggccctaatattatct |
43061301 |
T |
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| Q |
312 |
cttggtcatgcaagaagcaaccaacaattgcaaaatcgtcaactgaagctgaatatcgtactatagcagccactactcaagaattaatatgggttcaaaa |
411 |
Q |
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| T |
43061300 |
cttggtcatgcaagaagcagccaacagttgcaaaatcatcaactgaagctgaatatcggactatagcagccactactcaggaattaatatgggttcaaaa |
43061201 |
T |
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| Q |
412 |
cttgttacaagaacttcaaattccattaacggcaccaacaatattcttagaaaaca |
467 |
Q |
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| T |
43061200 |
cttgttacaagaacttcaaattccattaactgcaccaacgatattctcagacaaca |
43061145 |
T |
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