View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8100_low_12 (Length: 439)
Name: NF8100_low_12
Description: NF8100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8100_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 19 - 414
Target Start/End: Complemental strand, 26867253 - 26866863
Alignment:
| Q |
19 |
attcgaacataagtacgtgagaagggtggaaacgaaatagtctaatttgttgcctgaactaatgaatgtacattttacatggaagtgacgatgcaaagag |
118 |
Q |
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| T |
26867253 |
attcgaacataagtacgtgagaagggtggaaacgaaatagtctaatttgttgcctgaactaatgaatgtacgttttacatagaagtgacgatgcaaagag |
26867154 |
T |
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| Q |
119 |
ttggttaactaatctgtattggtcgttggcgtcaacatgataatttagaagtttaacccgattagtctgataaaatattcctatacttgattagaatatc |
218 |
Q |
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| T |
26867153 |
ttggttaactaatctgtattggtcgttggcgtctgcatgataatttagaagtttaacccgattagtctgataaaatattcctatacttgattagaatatc |
26867054 |
T |
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| Q |
219 |
tttacattaaatataaaaatattctggtatagggatattctatcataatcgaagttgttacttgttagctaacgcttcaaagcgaaaatgtatatataat |
318 |
Q |
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| T |
26867053 |
tttacattaaatataaaaatattctggtatagggatattctatcaaaatcgaagttgttacttgttagctaacgctt-----cgaaaatgtatatataat |
26866959 |
T |
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| Q |
319 |
taggacaaatcctgttgagccaacgttttttacttcaaccgtacagcccaatatatagtactatatccgttcctgattataagaccattttgagaa |
414 |
Q |
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| T |
26866958 |
taggacaaatcctgttgagccaacgttttttacttcaactgtacaacccaatatatagtactacctccgtccttaattataagacccttttgagaa |
26866863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 414
Target Start/End: Complemental strand, 34948688 - 34948651
Alignment:
| Q |
377 |
tactatatccgttcctgattataagaccattttgagaa |
414 |
Q |
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| T |
34948688 |
tactacatccgttcctaattataagaccattttgagaa |
34948651 |
T |
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