View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8100_low_14 (Length: 426)

Name: NF8100_low_14
Description: NF8100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8100_low_14
NF8100_low_14
[»] chr1 (2 HSPs)
chr1 (1-77)||(6313986-6314062)
chr1 (356-412)||(6300464-6300519)
[»] chr2 (1 HSPs)
chr2 (253-311)||(1574578-1574636)
[»] chr5 (1 HSPs)
chr5 (251-299)||(29803360-29803408)


Alignment Details
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 6314062 - 6313986
Alignment:
Q  1 taagatacactgaacggtcacatttgcttatatgttattaaagaagaagggaaacaatactaacatttgaattgagt 77  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  6314062 taagatacactgaacggtcatatttgcttatatcttattaaagaagaagggaaacaatactaatatttgaattgagt 6313986  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 412
Target Start/End: Complemental strand, 6300519 - 6300464
Alignment:
Q  356 ttctccatgaacatttgtctcaagatttatctacccaagcaaagcaaagaagaagaa 412  Q
    ||||| || ||||||||||||||||||||||||||||||  ||||||||||||||||    
T  6300519 ttctcaataaacatttgtctcaagatttatctacccaag-gaagcaaagaagaagaa 6300464  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 1574636 - 1574578
Alignment:
Q  253 gagcaatcatattcgaataataatttgctaacaactttaatgacaactttattttactc 311  Q
    ||||||| ||||| ||| ||  ||||||||||||||||||||||||| | |||||||||    
T  1574636 gagcaatgatatttgaacaaccatttgctaacaactttaatgacaacctcattttactc 1574578  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 299
Target Start/End: Complemental strand, 29803408 - 29803360
Alignment:
Q  251 acgagcaatcatattcgaataataatttgctaacaactttaatgacaac 299  Q
    ||||||||| ||||| ||| ||| |||||||||||||||| ||||||||    
T  29803408 acgagcaatgatatttgaacaattatttgctaacaactttgatgacaac 29803360  T

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